Trichomycterus rosablanca: 134312188
Help
Entry
134312188 CDS
T09921
Symbol
tnr
Name
(RefSeq) tenascin-R
KO
K06252
tenascin
Organism
trn
Trichomycterus rosablanca
Pathway
trn04510
Focal adhesion
trn04512
ECM-receptor interaction
trn04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134312188 (tnr)
04518 Integrin signaling
134312188 (tnr)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134312188 (tnr)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
trn00536
]
134312188 (tnr)
Glycosaminoglycan binding proteins [BR:
trn00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134312188 (tnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_TEN
EGF_Teneurin
Fn3_PBP1
FN3_DSCAM-DSCAML_C
Fn3_Dep-1_3rd
EGF_Tenascin
Fn3_Dep-1_2nd
FN3_Tor_3rd
Pur_ac_phosph_N
Fn3_VIN3
EGF_2
Interfer-bind
Fn3_Dep-1_1st
DUF4998
Fn3_ROS1
SPE9_EGF_3rd
Actin
Motif
Other DBs
NCBI-GeneID:
134312188
NCBI-ProteinID:
XP_062849990
LinkDB
All DBs
Position
4:8245285..8472769
Genome browser
AA seq
1340 aa
AA seq
DB search
MCRSIMVLGHSLLSLALLFLNVHAVPVHDDKVVYTARVRRQASDGNGINQSQPMIFNHVY
NINVPLETLCSANLESTEDDKPVEEYQEQTADSDSQVTFTHRINIPKAACVCPTINILQQ
LASRIEILEREIVLLRAQCSGTCCGENSGVGHLDLAPQCSGHGTFSMDVCGCICDEGWTG
KNCSEPRCPANCSTQGLCVDGECLCNGDAGAENCSEPRCPRDCSGQGVCIDGECMCEEAY
TGDDCSVTRCLNDCSEQGLCVNGTCQCRPGFSGEDCSRISCANNCSHKGRCKDGFCVCQE
GYVGDECASVAPPLNLQVRRVTEHTIDLEWEGSPIVTDYIITYVPTSPGGIQQELRVRGN
VTTIIVRELEPGLEYNINVYTVIDEVISVPIGTVVSTYLSNPDGLLFKSITETSIEVQWQ
PFDYLFDGWEISFIPKDNDGGMTTQLPSTITSFLQTGLRPGEEYTVNLVALKDQGRSQPV
TATVNTIIDGPTQLIVRDISDTVAFVEWVPPRAKVEEIILRYEIVNNGEPKTTFRLEPSL
SQYSLQVLRPGSKYRVSVSGVRQGNESQPVTAEFITEIDPPKQLRVLSKTSTSLELEWDN
SKASVDSYHVVYSTLSGDQYDKITVPHSNGTTTKTTLTNLQPGTEYGIGISAVLGNKQSI
PATMNARTGLDIPMNLMVIDSTENSITLLWSSVQGPIEYYRVSYTSANGVTTEVTVPKDI
SSTTLRGLEPGTEYTITVTAQRGRQQSAAATIDAFTGFRPVSQLYFSDITADSLAVAWSA
PAPPASSFTVHYVTHDYSEDGEVVVDGSKTRTVLLGLRPSKKYTVTLVAMHGEKASEPVK
GNVVTGMDPPRDMTVSYVTEDSVTVLWAHPFSSFNYYKMSYQTAKGRVDSVVIDKDVTNY
TLNSLYPATEYEIKLNTVRGSQESKVISTTFFTAMDTPMDLVALNVTPRGVLLRWTSPVS
SVDNYVLTLTRSQVTTDTFLVEGNKQEHQLSHLLPSTAYSIALYATKGPLTSGTVTANFI
TPMDAPQNLTATEISHRSALISWQPPLADIDNYMLTYKTADGSRKELILDAEDTWIRLEG
LAELREYTVRLQAARGLETSAIVSIIFTTGQRLFAVPQNCAQHLLNSELLSGLYTIYINR
DLSQGVQVYCDMTTDGGGWIVFQRRQNGLTDFSRKWSDYKNGFGNLEDEFWLGLDNINKI
TGQGRYELRVDMKNGQESVYAVYDRFSIGDSKSQYKLKIGEYNGTAGDSLSYHQGRPFST
KDRDNDIAVTNCALSYKGAWWYKNCHRVNLNGKYGESRHSQGINWHRWKGHEFSIPFVEM
KMRPYNYRSISGKRRRSTSL
NT seq
4023 nt
NT seq
+upstream
nt +downstream
nt
atgtgcagatccatcatggtcctgggtcattctctgctcagcctggcactgctgttcctc
aacgtccatgctgttcccgtccatgacgacaaggtggtatacacagccagggtcagacgg
caagcctcggatggtaacggcatcaaccagagccagcccatgatcttcaaccacgtgtac
aacatcaacgtccctctagagaccctgtgctcggctaatctggagtccacagaggatgat
aaaccggtggaggaataccaggagcaaacggcggactcagacagccaggttaccttcacc
catcgcatcaacatccccaaagcggcatgcgtgtgtccgactatcaacatactgcaacag
ctggccagccgcatagaaattctggagagagagatcgtactgttgagagcacagtgtagt
ggtacttgctgtggagaaaactctggcgtagggcacctggatttggctcctcaatgcagt
ggtcacggcaccttcagcatggatgtatgtggctgtatttgcgacgaaggctggacaggg
aagaactgctcagagccacgctgcccggctaactgctccactcagggtctgtgtgtcgac
ggagagtgtctttgcaacggcgacgccggcgctgagaattgctcggagcccaggtgtcct
agagactgctcgggtcagggagtgtgcatcgacggagagtgtatgtgtgaggaagcctac
accggtgacgactgctctgtgaccagatgtttaaacgactgctccgaacaggggctctgt
gttaatgggacgtgccagtgcaggccagggttttcgggcgaagattgctcacgcatctcc
tgtgccaacaactgtagtcacaagggcagatgtaaggatgggttctgcgtgtgccaggaa
ggctatgttggagatgagtgtgcttcagtggcaccacccttaaatttgcaggttcgaaga
gtgaccgagcataccattgacctggaatgggaggggtcaccgatcgtaacggactacata
atcacttacgttccgacgagccccggtggaatacagcaggagttaagggttcgggggaac
gtgaccaccatcatcgtcagagagctggagccgggcctggagtacaacatcaacgtgtac
acggtgattgatgaagtcatcagcgtgcctatcggcaccgtcgtctcgacctatctctcg
aatccggatggtttactatttaaatccatcacggagacatccatagaagttcaatggcag
ccctttgactacctgttcgatggatgggagataagttttattcccaaggacaacgatggt
gggatgacgacccagctgccgagcaccatcacctctttccttcagactggtctaaggcct
ggagaggagtacactgtaaatttggtggcactgaaagaccagggcagaagccagccagtt
actgccactgttaacacaataatcgatggaccaacccagctcattgtgcgggacatatca
gacacagtggcattcgtggaatgggtgccacctagagccaaagttgaagagatcattctg
cgttatgaaatagtaaacaacggggaacccaagaccactttccgccttgagccgagtcta
agccagtactccctgcaggtcctgagacccgggtccaaatacagagtgtcagtgagcggt
gtgcgacaaggcaacgaaagtcaacctgttactgccgagttcatcacagagattgatcct
cctaagcaattgcgggtgctgtccaaaacgtccacgtctttagagttggaatgggacaac
agcaaggcatctgtggacagctatcatgtggtgtacagcacactgtctggagatcagtac
gacaagattactgtccctcacagcaatggaaccacaaccaaaacgactcttacaaattta
caacctggtacggaatatggaatcggtatatcagccgttcttggtaacaagcaaagcatc
ccagccacaatgaatgccaggacaggtctggatatccctatgaacctgatggtcatcgac
tccacagagaacagcatcactttgctttggagctcagtccagggacctattgagtactac
agagtgagctacacctcagctaatggagtgaccactgaagtgactgtgcctaaagacata
agcagcaccacgttgaggggcctggagcctgggaccgagtacaccatcacagtcacggct
cagaggggccggcagcagagcgcggccgccactatagatgcttttacgggctttcgtcct
gtatcccagctctacttctcagacatcacagccgactctttggcagtggcctggagtgct
ccggccccgcctgccagtagtttcactgtgcactatgtgacccatgactacagtgaagac
ggtgaagtcgttgtggatggttccaagaccaggaccgtccttttaggtcttcggccttca
aaaaaatacacagtgaccctagtggcgatgcatggtgagaaagcttcagaaccggtcaag
ggcaacgttgtcacaggtatggaccctcccagagacatgaccgtgtcctacgtcacagag
gattcagtaacggtgttatgggcacaccccttctcttccttcaattactacaaaatgtcc
taccaaactgctaaaggtcgggtagacagcgtggtgattgataaggatgtaacaaactat
actctgaatagtctttatccagcaacggaatacgagatcaagttgaatactgtgcgagga
agccaggagagtaaggtcatcagcaccaccttttttacagccatggacacgcctatggac
ctggtagctctgaacgttacgccgcggggggtgctgctgcgctggacgtctccggtctcc
agcgttgataactatgtgctcaccctcacccgcagccaagtgacaactgacacgtttcta
gtggaaggaaacaagcaagagcatcagctgagccaccttcttcccagcactgcctactcc
attgccctgtatgccactaagggccctctgaccagtggtacagtcaccgccaacttcatc
acacctatggacgcgccgcagaacctgaccgccactgagatcagtcaccgcagtgccctc
atctcttggcaaccgcctctcgccgacatcgataactacatgctgacctacaaaacagct
gatggtagccgcaaggagctaatattggatgcggaggacacatggattcgtctagagggg
ctggctgagcttagagaatacacagtacgactacaggcagccagaggcctcgagaccagt
gccattgtctctataatattcaccacaggacagcgattgttcgccgtgccccagaattgt
gcccagcatctgctaaatagcgagcttctcagcggactctacactatctatatcaaccgt
gaccttagccagggcgtgcaggtctactgtgacatgactacagatggtggaggctggatt
gtgtttcagcgtcgccagaatggcctgactgatttctcacgaaagtggagtgactacaag
aatggctttgggaatctagaggatgagttctggttaggcctggacaacattaacaagatc
acgggacaagggcgctacgagctgcgcgtggacatgaaaaatggccaagagtccgtttat
gccgtctacgacaggttctctattggagactccaaaagccagtacaaactgaagatagga
gaatacaatggaactgcaggcgactctctgagctaccaccagggtcggcctttctccacc
aaagacagggacaatgacattgctgtgacaaactgtgctctttcttacaaaggagcctgg
tggtacaagaactgtcacagggtcaatctgaatggtaaatatggggagtccagacacagt
cagggtatcaactggcacagatggaaaggtcatgagttttccatcccctttgtggaaatg
aagatgaggccctacaactaccgaagtatcagtggaaaacgaaggaggtccacttcactt
taa
DBGET
integrated database retrieval system
