Trichomycterus rosablanca: 134312194
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Entry
134312194 CDS
T09921
Symbol
smg7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
trn
Trichomycterus rosablanca
Pathway
trn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
134312194 (smg7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trn03019
]
134312194 (smg7)
Messenger RNA biogenesis [BR:
trn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
134312194 (smg7)
mRNA cycle factors
Common to processing body (P body) and stress granule
134312194 (smg7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
134312194
NCBI-ProteinID:
XP_062849995
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All DBs
Position
4:9288179..9342623
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AA seq
1155 aa
AA seq
DB search
MTDSKLGAAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQSQAKN
RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQSNSSG
IVKPQPSSCSYVCQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS
KGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWSVSDFIKAFIKFHG
HVYLGKSVEKLCALREKLEDQFQRLLLQKAFSSQQLVHITVINLFELHHLRDFSNENDDQ
SFSSDEEICWFQLLGLFMSFLGVMCSRALLNKEKNQEDIMGECPLPAVKVSLDWLRLRPV
FTENAVDQRQYIWPWLVSILNSFQPKEEDVSNPSATPLAEEFELQGFLALRPALRLLDFS
KGHQGVVVGKETLMIHARQQRLINLGKWVADNHPNLIQCRISDGLLLFLTAIPELAIEQP
QEKEPSVLQESSNGEQNPHDSSLGLKSVLSMGKSQSSGLDGSERPVVTFKENIKPREQSR
EQNRTQQHRDAGKERSGFSKGNGAPLKSEQKKDGKRKSEVKKNSHDKASDAGKQVTFDVK
SQSEMRKTPVSEARKTPVTQTQTTCSSQFIPIHHPGAFPPLPSRPGFPPPAYVIPPPVAF
SMNPGFTFPASVSVSASYLQSASHPQSANQVQSGKPSHIPYSQQRPSGPGGLAQGPPPAQ
PQPQTAHPQPSKAALKQGVQLQVQQQQSPTKQSSQLGKSPPHHTGMQQQFMPVSDQMWNH
HAQPSMAKMPMPVKQPFFMPTQDHMKLFEHSMPPAVPMQPPQPSMDKKINFQDVKMQDFY
WEPPYRMNESRGSMAERMGKHQAGVFCPEQDNTPRVPPYEGNKSSPLLPPDLLKTLADFE
EEEELVFTKPHDFYQALAGPLNSAPGRNMFLPNQSRLDNAPEVLAQSSLLHRSVFPVQEN
YQNNSIFSEAYGKNMAPTPKPDVPMMHQEPSLYSLFEGTPWSPPLPASSDHSTPASQSPH
SSNPSSLPSSPPTHSHGALPFSNFGPIGTPDSRDRRAADRWKAEKTGVSGFGLDYLPAGP
SSSVQEPNTWHQGAPTNSWAAQDIPMEDSSTVLLDSFKSIWSSSMMQPGPSALEQLLMQQ
KQKQQRGHGTMNPPH
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgacagattcgaagctcggcgctgctgaggtctggacatcacgacaggctcttcaggac
ctgtaccagaaaatgctggtgacggatctggagtatgccttggacaagaaagttgaacaa
gacctctggaaccatgcttttaagaatcaaataacaacactacagagtcaggccaagaac
agagccaaccccaatcgaagtgaagtccaggccaatctctctctctttctcgaggcagct
agtggattttacacacagttattgcaggagctgtgcacggtgttcaatgtggatttgcct
tgtcgggtgaagtcgtctcagctaggcatcatcagcaataaacagagcaactccagcggc
atagtgaagccacagcccagctcttgctcctatgtctgccagcactgtctagtccacctg
ggggatatcgcacggtatcgtaaccagaccagccaagcggagtcctattacagacatgca
gctcagcttgttccatcaaatggtcaaccatacaaccagttggcgattctggcctcctcc
aagggagaccacctcacaacaatcttctactactgcagaagcatcgcagtcaagtttccc
tttccagcagcttccaccaacttacagaaagctctttccaaagctcttgagagccgggat
gaagtcaaaaccaaatggagcgtgtctgacttcatcaaagccttcatcaagttccatggg
cacgtttacctcggcaaaagcgtggagaagctctgtgctttgagagaaaagctggaggat
cagtttcagagattgctactccagaaagcgttcagctctcagcagttagttcacatcaca
gttattaacctgtttgagctgcatcacctgagagacttcagcaacgagaacgatgatcag
agcttcagttcggatgaggagatctgctggtttcagctcctgggtctttttatgtctttc
ctgggtgtgatgtgcagccgagctttactaaataaagaaaagaaccaggaagacatcatg
ggcgagtgtccgctgccggccgtcaaagtgtccctggattggctgaggctgcggcccgtc
tttaccgagaacgcagttgaccagagacagtacatttggccttggctcgtatctatcctt
aacagctttcagcccaaggaggaggatgtgtcaaatccatcagcgactcctcttgcagaa
gaatttgagttgcaagggtttctggctctgagacctgcattaaggttgttggacttttcc
aaaggacatcagggtgttgtggtaggcaaagaaactcttatgattcatgcccggcaacaa
agactcatcaacctgggcaagtgggtggcagacaatcacccgaatctgattcagtgtcgc
atcagcgacggcctgctcctcttcctcaccgccatccccgagctggcaatagaacagcca
caagagaaggagccgtctgttctccaggagtcctcgaacggcgagcagaaccctcacgac
agctcactgggcctcaaatcggtgctttccatgggcaagagtcagagcagcggtctggac
ggcagcgagaggcccgtggtcacgttcaaagagaacatcaaaccccgcgagcaaagtcgc
gagcagaaccggacccagcagcacagggatgcgggaaaggagcgatccggcttcagcaag
ggcaacggagcgccgttaaagagcgaacagaagaaggacggcaagaggaagagcgaggtc
aagaaaaacagccatgataaggcatccgacgcaggcaaacaggtgacatttgatgtcaaa
agtcagtcagaaatgaggaaaactccagtgtctgaagctagaaagaccccagtcacgcag
actcagacgacctgctcttcacagttcatccccatacatcacccaggagcctttccccct
cttcccagcaggccaggatttcccccgccagcgtatgtcatcccaccccctgtagcattc
tccatgaaccccggtttcacctttccagcgagcgtgtccgtctccgcctcctacctgcag
tccgcctcccacccccagtctgccaatcaggtgcagtctggaaagccctctcacattccc
tacagccagcagaggccgtccggccccggtggcctcgctcaaggaccacccccagcccag
ccccaaccacagacggctcatcctcagccttccaaagcggctctgaagcagggtgtgcag
cttcaggtacagcagcagcagtcgcccaccaagcagagctctcagctgggcaagagtccg
cctcaccacaccggcatgcagcagcagttcatgcccgtgtccgaccagatgtggaaccat
cacgctcaaccctcaatggctaagatgcccatgccagtcaagcaacctttcttcatgccc
acccaggaccacatgaagcttttcgagcactccatgcccccggctgtgcccatgcagcca
ccccagcccagcatggacaagaagattaatttccaagacgtcaagatgcaagatttttac
tgggagccgccgtaccgtatgaacgagagcaggggcagcatggcggagaggatgggcaaa
caccaggctggagtcttctgcccagaacaggataacacgccccgagtgccaccctatgag
ggcaacaagagctctcctcttcttcctccagacctgttaaaaactctggcagactttgag
gaggaggaggagctggtctttactaagcctcatgatttctaccaggccttggccggccct
cttaactctgctccgggaagaaacatgtttttaccaaaccagtccaggctagacaatgca
ccagaggtactggctcagtcatcactgctgcaccgttcagtctttcccgttcaggagaac
taccaaaacaacagtatattcagcgaggcctacggtaaaaacatggcccccacaccaaag
cccgatgttcctatgatgcaccaggaaccctccttgtactccctgtttgaaggaactcca
tggtccccacccctccctgccagctcagatcactcaaccccagccagccagtcgcctcac
tcgtccaaccccagcagcctgccttcgtctcctcccacccacagccacggcgctctgccc
ttttccaatttcggccctatcggcacgccggacagccgcgatcgcagagcagccgaccgc
tggaaggctgaaaagactggtgtaagtggctttggtctggattacttgcctgctggcccg
tcatcctccgttcaagagccaaacacctggcaccagggcgcgccaaccaacagctgggca
gctcaagacataccgatggaggactcgtccaccgttcttctggacagctttaagtcaatc
tggtcaagctcgatgatgcagccaggcccttctgcactggagcagctcctcatgcagcag
aagcagaagcaacagcgcggccacggcaccatgaacccgcctcactga
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