Trichomycterus rosablanca: 134312229
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Entry
134312229 CDS
T09921
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
trn
Trichomycterus rosablanca
Pathway
trn03013
Nucleocytoplasmic transport
trn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
134312229 (upf2)
03015 mRNA surveillance pathway
134312229 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trn03019
]
134312229 (upf2)
Messenger RNA biogenesis [BR:
trn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
134312229 (upf2)
mRNA cycle factors
P-body specific factors
134312229 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
134312229
NCBI-ProteinID:
XP_062850068
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All DBs
Position
1:50361601..50399710
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AA seq
1281 aa
AA seq
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MPAERKKSMNMDEKESASFSNKEREKERDGDRRATFSREKGRDESKMSAKKESGKSADEK
KRRAEEEKKRKEEKERKKKEEEKQKAEEEQKRKEEEERKLQEEQEKKLLEEEAKRQKEEE
AAQLKEKEEAQQLHQESWERHQSRKELRGKNQHAQEGRPEEAFFSRLDSSLKKNTAFVKK
LRTLTEQQRSSLTHDFDTLNLSKYIGEAVSSLVEAKLKISDVGCAVHLCSLFHQRYADFA
PLLLAAWKRHFEARKEEKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKNIIGT
DRETHTHVSVVISFCKHCGDDIAGLVPRRVKSAADKFNLNFPPCEIINIEKQQPFQNLLR
EYFTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATCYQKLLASTQSLA
DLLDENMPELPQDKTVQEEHGPGIDIFTPGKSGDYELDGGIWEDEDARNFYENMVDLKAF
IPAILFKDNEKTGLNKDKDDSKEAKEGKEASSTEELELELETLDINDDPLELEAVDEAES
EELAKKLLDEQEQEDEEASTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNTKSN
RRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVAEDLCSMLKGDFRFHVRKKDQINI
ETKNKTVRFIGELAKFKMFLKTDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPDS
HLRTSVLLEQMMRKKQAQHLDARYVTMVENAYYYCNPPPMEKTVRKKRPPLQEYIRKLLY
KDLSKVTTEKFCGVFQVLRQMRKLPWQEADLKSYLICCMVNIWNVKYNSIHCVANLLAGL
VAYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLF
SFISFGVNPDGSPSPLDPPEHLFRIRLVCTLLDTCGQYFDRGSSKRKLDCFLIYFQRYIW
WKKSIEVWTKEHPFPIDIDYMISDMLDLLRPKMQLCSSLEEASRQVTELEREVLNKLGFA
KEKDGSCSSTGGDGEALDEEDEDDEDEGGAETEEQSGNESEMNEPEEEEGSENEEEEHEE
EEENTDYLTDSNKENETDEENNEVMIRGGGLKHVACAEDDDFIQALDKMMLENLQQRSGE
AVKVHQLDVAIPLQLKSQLKKGPTPSCTADAEADIDTMQFVMLTRKGNKQQFKILNVPLS
SHLAANHFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMQSLAQRPAPANTNRERRPR
YQHPKGAPNADLIFKTGGRRR
NT seq
3846 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctgagcgcaaaaagtcaatgaacatggacgagaaagagtcagcctccttcagt
aacaaggagagagagaaggagagagatggggataggcgagccaccttctccagagagaaa
ggtagagatgagagcaagatgagcgccaagaaagaaagcggaaaatctgcagatgaaaaa
aaacgaagagcggaggaggagaaaaagagaaaagaagaaaaagagcgcaagaagaaggaa
gaagagaaacagaaggccgaagaggagcaaaagaggaaagaagaagaggagcgaaagctg
caggaggaacaagaaaagaagctgctggaggaggaagctaagcgacaaaaggaagaggag
gcagcacagctcaaagagaaggaagaagctcaacagctgcaccaggagtcctgggagaga
caccaaagcagaaaggagctgcgtggaaagaaccagcacgctcaggagggccgtcctgag
gaagccttttttagccgcctggattccagcctcaagaagaacacagccttcgtcaaaaag
ctccgtacgctcacggagcagcagcgcagctcgctcactcacgacttcgacacactcaac
ctcagtaaatacatcggcgaggcggtcagctcgctggtcgaggccaagctaaagatctct
gatgtgggctgtgccgtacacctgtgttctctgttccaccagcgctatgcagattttgct
ccactcttgctggctgcctggaagaggcactttgaagcacgcaaggaggagaaagctcca
aacgtaagcaaactgcgcacagacctgcgctttattgctgaactcaccattgtggggctt
ttcactgataaggaggggctttcgctcatctacgagcagctgaaaaacatcattggcaca
gatcgagaaacccatacccatgtttcggtggtgatcagcttctgtaagcactgtggagac
gacattgctggcctggtacctcgccgcgtgaagagcgcagctgacaagttcaatctaaac
tttcctccctgtgagataatcaacatagagaagcagcagcctttccagaacttgctcaga
gagtattttacctctctcaccaagcacctgaagaaagatcatagagagctgcagaacatt
gaaagacaaaacaggcgtatcttgcactctaaaggagagctgagtgaagatagacataaa
cagtatgaggagtttgcaacatgctaccaaaaactgctggctagcacacagtctctggct
gatctgctggatgagaacatgcctgagctgccccaggataagactgtgcaggaagagcat
ggtccaggcattgatatcttcacccctggaaagtctggagactatgaacttgatggtggg
atctgggaggatgaagatgcacggaatttttacgaaaacatggtggacctgaaggccttc
atacctgccattctgtttaaggacaatgaaaagactggtcttaacaaagacaaggacgat
agtaaagaagctaaagaaggaaaagaagccagcagcacagaagaattagagctagaactc
gagactctggacatcaacgatgaccctctggaactggaggctgttgatgaggctgagagt
gaagaactggccaagaagcttcttgatgagcaagaacaagaagacgaggaggccagcacc
ggctctcatcttaaacttattgttgacgcgttcatccagcagcttcccaactgtgtcaac
agagacctgattgacaaggctgccatggacttttgtatgaacatgaataccaagtccaac
cgcagaaagcttgtccgtgcgctcttcactgttcccaggcaaaggttggatctgttgccg
ttctactcgcggctggtggccactcttcacccctgcatgtctgatgttgctgaagatctc
tgctccatgcttaaaggagactttagattccatgtgagaaagaaggaccaaatcaacatc
gagaccaagaataaaactgtgaggttcattggcgagttggccaagttcaaaatgttttta
aaaacggacactctgcattgccttaagatgctgctgtctgatttctcccatcaccatatc
gaaatggcttgcactttactggagacatgcggacggttcctttttaggtcacctgactct
cacctgcgtaccagtgtgctactggagcaaatgatgcggaagaagcaggcacagcatctg
gatgctcgttatgtgactatggtagagaatgcgtactactactgcaaccctccacccatg
gagaaaactgtacgcaagaagagaccaccactacaggagtatatacgcaaacttctctac
aaagatctgtcaaaagttaccactgaaaagttttgtggggtttttcaggtactgaggcaa
atgcggaagttgccctggcaggaagcagatttgaagagttatctgatctgctgcatggtg
aacatctggaatgtaaagtacaacagtatccattgtgtggctaacttgctggctggtctg
gttgcataccaggaggatgtgggcatacatgtagtggatggagtactggaagacatccgc
cttggcatggaggtaaaccagccaaaatttaaccagcggcgcattagcagtgccaagttc
ctgggtgagctgtacaactaccgcatggtggagtctgctgtaatcttccgcactcttttc
tccttcatctcatttggtgtgaatccagatggatcacccagccctctggatcctccagag
cacctatttcgcatccgcttggtctgcacgctgctcgacacttgtggtcagtactttgac
cgaggctccagcaaaaggaagcttgactgcttcctcatctattttcagaggtatatctgg
tggaagaagagtatagaggtgtggaccaaagaacacccctttcccattgatattgactac
atgattagtgacatgctggatttactcaggcccaaaatgcagctgtgcagctcgctggag
gaggccagtcgccaagtcactgagctagagagagaggtccttaacaagctaggctttgcc
aaagagaaggatgggagttgctccagcacagggggagatggtgaggctctcgatgaagag
gatgaagatgacgaagatgaaggtggagcagagacagaagagcagtctggaaatgagagc
gaaatgaatgaaccagaagaggaggaaggctcagagaatgaggaagaggagcatgaggag
gaggaagagaatacagactacctgaccgattccaataaagaaaatgagacggatgaggag
aacaatgaggtgatgattcgaggtggaggtctgaaacatgtcgcctgtgctgaggacgac
gactttattcaggctctggacaaaatgatgctggagaacctgcagcagcgcagcggagag
gcggtgaaagtgcaccagctcgacgtcgcgatcccactgcagctaaagagtcagctaaag
aaaggcccaaccccctcgtgcacggcagatgcagaagccgacatagacaccatgcagttc
gtcatgctgaccagaaaaggcaacaaacagcagtttaagatcctcaacgtgccactgtca
tctcatctggctgccaatcacttcaatcagcagcaggctgaacaagaggagcgcatgcgg
atgaagaaactaactctagacatcaatgaacgacaggagcaagaggattaccaggagatg
atgcagtcgctggctcagagacccgctccggctaacacaaaccgagagcgcagaccacga
taccagcaccctaaaggagctccaaatgcagacctgatattcaagactggggggaggaga
cgctga
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