Trichomycterus rosablanca: 134312232
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Entry
134312232 CDS
T09921
Symbol
smarcd3b
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3b isoform X1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
trn
Trichomycterus rosablanca
Pathway
trn03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
134312232 (smarcd3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
trn03021
]
134312232 (smarcd3b)
03036 Chromosome and associated proteins [BR:
trn03036
]
134312232 (smarcd3b)
Transcription machinery [BR:
trn03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
134312232 (smarcd3b)
Chromosome and associated proteins [BR:
trn03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
134312232 (smarcd3b)
PBAF complex
134312232 (smarcd3b)
GBAF(ncBAF) complex
134312232 (smarcd3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
134312232
NCBI-ProteinID:
XP_062850067
LinkDB
All DBs
Position
4:complement(22514199..22560264)
Genome browser
AA seq
531 aa
AA seq
DB search
MASEETAGGARKATKSKLFEFLVHGVRPGMPSGARMPHQGAPMGPPGPPFAGNPSVRPGL
PNPAMEANRKRPAPSQQHIQQQQQQGIQSRNRKKPVGFPGANEMPARQMDMRDAQSDLSL
GSNTKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQK
RKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDDPGKVKRKFSSFFKSLVIELDK
DLYGPDNHLVEWHRTPTTQETDGFQVKRPGDVNVRCTLLLMLDYQPPQFKLDPRLARLLG
IHTQTRSCIIQALWQYIKTNKLQDSHDKEYINCDKYFQQIFDCPRLKFSEIPQRLTNLLL
PPDPIVINHIISVCVGSVDPNDQKKTACYDIDVEVEDPLKTQMSNFLLSTANQQEIATLD
NKIHETIESINQLKIQRDFMLSFSRDPKGYIQDWLKSQSRDLKLMTDVVGNPEEERRAEF
YYQPWSQEAVSRYFYCKHTQFLSSTAERYQIASKEIPLHHLGASSFLYVTV
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggcttcggaggagacggctggaggggctcgcaaagccaccaagagcaaactgttcgag
ttcctcgtccacggagtgcgtcccggtatgccatctggagctcggatgccccatcagggg
gcgccgatgggaccccctggaccaccatttgcaggaaacccatctgtacgtcctgggctc
cccaatccggcaatggaggccaaccgcaaacgtcctgcaccttcacaacaacatatccag
cagcaacagcagcaagggatacaaagcagaaacaggaagaagcctgtgggatttccagga
gccaatgagatgccagcaaggcagatggacatgagagacgcccagtcagatctgtcgctt
ggatcaaacactaagaggaggaaaatggctgataagatccttccacaaaggattcgtgag
ctagtcccagagtctcaggcgtatatggacttgctggcatttgagcgcaagctggaccaa
accataatgcgcaagcgagtggacatccaagaagcattaaaaagacccatgaagcaaaaa
cgcaaactgagactctacatttccaacaccttcaacccagccaagccagatgctgaggac
tcagatggcagcattgcatcctgggagctgcgagtggaaggaaagttacttgatgatcca
ggaaaagtgaaaagaaagttttcctccttctttaagagtctggtgattgagctggacaag
gacctgtacgggccagacaaccacctagtggagtggcatcgcactcccaccactcaggag
actgatggctttcaggtgaaaaggccgggtgatgtaaatgtacgctgcactctgctgtta
atgctagattatcagcccccccagtttaagctggacccacgactcgcccgactgctggga
atccacactcagacacgctcctgcatcatccaggctctctggcagtatattaaaaccaac
aagctgcaggactcccatgataaggagtacataaactgtgataaatacttccagcagatt
tttgactgccctcgtctgaagttctctgagatccctcagcgcctcacaaacctgctgctt
ccccctgaccccattgttatcaaccacatcattagtgtgtgtgtgggtagtgtggaccca
aatgatcagaagaaaacagcctgctatgatatagacgttgaagtggaggatccactaaaa
acccagatgagcaacttcctactctcaactgccaatcagcaggagatcgccaccctcgac
aacaagattcatgagactatagagtctattaaccagctgaagattcaaagagatttcatg
ctcagcttctctagagatcctaagggttacatccaggactggctcaaatcccagagcaga
gatctcaaactgatgacagatgttgttggaaacccagaggaggagagaagggcagagttt
tactaccagccctggtctcaggaggcagtcagtcgttacttctattgcaagcacactcaa
tttttgtcttccactgccgagagataccagattgcatccaaggagatcccgctgcaccac
ctgggcgcctccagctttctttatgtcacagtttaa
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