Trichomycterus rosablanca: 134312304 Help Entry 134312304         CDS       T09921                                  Name (RefSeq) synaptopodin-2   KO K24066   synaptopodin-2 Organism trn  Trichomycterus rosablanca Pathway trn04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:trn00001]  09140 Cellular Processes   09142 Cell motility    04820 Cytoskeleton in muscle cells     134312304  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04990 Domain-containing proteins not elsewhere classified [BR:trn04990]     134312304 Domain-containing proteins not elsewhere classified [BR:trn04990]  PDZ domain-containing proteins   Other PDZ domain-containing proteins    134312304 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  PDZ PDZ_6 Motif Other DBs NCBI-GeneID:  134312304 NCBI-ProteinID:  XP_062850216 LinkDB All DBs Position 4:30285950..30315868 Genome browser AA seq 1533 aa AA seqDB search MSALWNYACVNLRGCAPWGFQLRQTDTEPHRPVQVHQVEEGSHASLAGLCEDDELVSVNG VSCSNLSLAEVIVFIENATDCLQLVVKRCCLHPEEQSHSVNNTFQICPIKPQKETYRFTE SQEKHNGKTDSNDAINTVVCTQFCIPAPKESVEPDIKVSSEVPRLEIIPGSVVELQLSLA KTTLEKNTSCTSLGSARGVEVDFNNQPNNEDDNTTTSAPGSSSFYIPLHERQPLGQRGVL VSSPSALLGQVDITLEPIGRDSETEWVEACETEDRGGKQVDYTETERGHTGQAATSFSVS FGIPSEERDSESERELNQPNKHRARHARLRRSESLSEKQVKEAKSKCKRIALLLTAAAPN PHNKGLLMFKKHRQRAKHYTLVSYGTGENEPQSDDEDNENYKEAHAVEFTVLATSETELD GDFLKNCLDHKSIVTFDCDTGLLEIERKLHNKEDMNVLPETKGKGALMFAQRKQRMDEIA AEHEDMRSKGISVESVQDAEKHYQHQPYMQANDGQNYMDVNVSHQQQHPQYQQYEDHYFH HQQQHQQQQQYQEYQQQMQYQQQHHYQQHQDYQQQLEFKQQQQYNQQQQYQQQVQQYSNN MNGMSSHQSNVMQSSVINRSAKPFSVQNTAAVTFSPSVTQEHYSDGQGEQIASRDERISV PAIKTGILQDSSRKNKSKPMFTFKEPPKVSPNPVLLNLLHKSDKKVAFDSGPEEDYLSLG AEACNFLQSPKVKDKTPPPVAPKPHINPASPPWSPEPETAEQQFPQHAENNVPVSARDSV TKIEPTAIPDQEPSSSPAPERQQALTNPPSQVQPEAVNAWGVSKPPMQSAQHTDTWHENQ FQPQLQAKPEPPVSSWGLSSTQAHEQPPVSAWGPAEVSLQAQTQSQSNMQPPWATQPQVN SEVQPPTSIQTQSQPQPALVPQSQHQPQHQPQMNTWATAPTQSTHQTQWAQSQHQEEASV STWSQEPNQPQVQPPWAQQQQVSQPSPPWTAPQQHSQPSWIQPQSQAQPWTSPTQQQVLQ QPPVNTWNQPQSPVQAQPQWAQQAQPSPQLPSQMQQHQNTWSSAPSQSQSSWTQQTQEQP QQMISSWTPEQSQVPPPWTQPQSPSQTQPQWSHQPQKQAPPQSHSKTVSSGWTPRPQQGP VSNTAAAEPHKLAQQVKPWSPPQTSQTSPANRLNSYTPTSRAPAPASATSSMSRTGMGSA FEMPALKGKGAELFAKRQSRMEKYVVDSTTVQANQARPSSPTPSLPVSWKYSPNCRAPPP LSYNPLQSPSYPPGATKQPPSSSTTLKNKNKGKDKEKPAPKPLNVLDVMKHQPYQLKSSL FTYGPAAEKLAAENEAAQKLAAQQKAGAQAQPLPEAHAMASSTLVQNQDLRYDQVPGPYG FMASHQTQPPQQPYVTSTAMHDSPYHHTSDSYQPAPNVYQQVPYELHNPQHAYQQPPSSP YQQAPSLSYQQPPSYQTGPTPPYQTGPNMSYQASPTSCYQQAPSSYVIPACPVAARSDSA SGSTIVAAPKPKFSAKKSDAQVWKPGTAKSADN NT seq 4602 nt NT seq  +upstreamnt  +downstreamnt atgagcgcgctgtggaattacgcatgcgtgaatttgcggggatgtgcaccctggggcttt caactgcgccagactgacactgaacctcacagacctgttcaggtgcaccaggttgaagaa ggcagtcatgcatccttggctggtttgtgtgaggatgatgagcttgtttctgtgaatgga gtatcctgctccaacctcagccttgcagaggttattgttttcatcgagaatgccactgac tgcttgcaactagtagtaaaaaggtgctgtttacaccctgaagaacagtctcattctgtt aacaatacttttcaaatttgcccaataaaaccccagaaggagacctacaggtttacagag tcacaggagaaacataatggcaagacagatagtaatgatgccatcaacactgtggtctgc acccagttttgtatcccagctccaaaggagagcgttgaaccagacatcaaagtctctagt gaagtccctaggttagaaatcatcccaggatctgtggtggaactgcagctgtcactggca aagaccaccctagagaagaacaccagttgtacgtcactaggcagtgctcggggagttgaa gtggactttaacaatcaaccaaacaatgaagatgacaatacaacaaccagtgctcctggc tcctcctccttctatataccactacatgagagacagcctctaggtcagcgaggcgtgctt gttagctctccatctgctttgctgggacaggtggacattactttagagcctattgggagg gactctgaaacggaatgggtggaggcctgtgagactgaggatagggggggtaaacaagtg gattacactgagacagaaagagggcacactggccaggctgctacctccttttctgtctcc tttggaattccatcagaagaacgggactctgagtctgagagggagctcaatcagcccaac aagcaccgggcaaggcacgccaggctccgacggagtgagagcctgtccgagaaacaggtg aaggaggccaagtctaaatgcaagcggattgctcttctcctgactgctgctgcccccaac cctcataacaaggggttgttgatgtttaaaaagcacagacagagagccaagcattacaca cttgtaagctacggaactggagaaaatgaaccacaatctgatgacgaagacaacgaaaat tacaaggaagcacatgctgttgaatttacagttctagccaccagtgaaactgaacttgat ggggatttcttaaaaaactgcttagaccacaagagcattgtaacctttgactgtgatact ggacttcttgagatagagcgcaaacttcacaacaaagaagatatgaatgtgctccctgaa actaagggcaaaggagccctgatgtttgcacagcgcaaacagcgcatggatgagattgca gcagaacatgaagacatgagaagtaaggggatctctgttgagagtgtgcaggatgctgag aagcattaccagcatcagccttacatgcaggctaatgatggccagaattacatggatgta aatgtgagccaccaacagcagcacccgcagtaccaacaatatgaagaccattattttcat catcagcaacaacatcaacagcagcaacaatatcaagagtaccaacagcaaatgcaatat caacagcaacatcattaccaacaacatcaagattaccaacaacagctggagttcaagcaa cagcaacagtataatcagcagcaacagtaccagcaacaggtgcaacaatattctaataat atgaatggtatgtctagtcaccaatccaatgtaatgcaatcatcagtcattaatagaagt gccaagccattttcagtacagaacacggcagcagtcacattctccccatctgtaactcaa gagcattattcagatggacaaggagaacaaattgcatccagggatgaacgaatttctgta cctgcaatcaagacagggatcctacaagattccagcagaaagaacaaaagtaagcccatg tttacttttaaagagcctccaaaagtttctccaaacccagtgctattgaatcttctccat aaaagtgacaaaaaggtagcctttgattctggtccagaggaggattacctaagcttgggg gcagaggcttgcaactttttgcagtcccctaaagtaaaggacaaaaccccaccaccagtt gcccccaaacctcacataaacccagcttccccaccttggtcacctgaaccagaaactgca gaacagcagtttcctcaacatgctgaaaataacgtcccagtatctgccagggattctgtg actaaaatagagcccacagccataccagatcaggaaccctcctcctcacctgctcctgaa cgacagcaagctctcactaaccccccttcacaggttcagccagaagcagtcaatgcatgg ggtgtatctaagccacccatgcagtcagctcagcacacagacacatggcatgagaatcaa tttcaaccacaattacaggcaaagccagagccacctgttagctcttggggtctatcttca actcaagctcatgagcagccaccagtaagtgcttggggtccagctgaggtttctttacaa gcccagacacagagtcagtcaaatatgcagccaccctgggcaacccagccccaagtcaac tcagaagtgcaaccacccacatctattcaaacccagtcacaaccccagcccgccttggtg ccacagagtcaacatcaaccacaacatcaacctcaaatgaatacatgggcaacagctcca actcagtcaacacaccaaacccagtgggcacagtctcaacatcaagaagaggcctctgtt agtacttggtctcaagagccaaatcaaccacaagtacaaccaccctgggcccaacagcaa caagtatctcagccatcgccaccatggactgctcctcaacagcattctcagccctcttgg attcagcctcaaagccaggcacagccttggacctccccaacccagcagcaagtactgcaa caaccacctgtaaatacatggaaccaacctcaaagtccagttcaagcccagcctcaatgg gctcagcaagctcagccatcccctcagctcccatcacaaatgcagcaacatcaaaatact tggtcctcagcacccagtcagtcacagtcatcatggactcaacagactcaagaacagcca cagcaaatgataagctcatggacaccagagcaaagtcaagtaccgccaccctggactcag ccacaatctccatctcagacacaacctcaatggtctcatcagccccagaaacaggcacca ccacaatcccattctaaaacagtttcaagtggatggacaccaaggccccagcaaggtcca gttagtaacacagctgctgctgaaccccataaactggctcagcaggtcaaaccatggagt ccacctcagactagtcaaacctctcctgcgaatcgattaaactcatacacacctacatca agagcaccagcaccagcatcagcaacaagtagtatgtctcgcactggaatgggttcagct tttgagatgccagccttgaaagggaaaggtgcagaactcttcgccaagaggcaatccaga atggaaaagtatgtggtggattccactacagtgcaggcaaatcaggcaagaccttcatcc cctactccttctttgccagtctcatggaaatattcacctaattgtcgtgctcctccacct ttgtcatataatccactacaatcaccctcatatccaccaggtgctactaagcaaccacca tcatctagtacaactttaaagaacaaaaataagggcaaagataaagaaaaacctgcaccc aaaccacttaatgttttggatgtcatgaagcatcagccgtaccaactaaagtcatctctg tttacctatggtccagcagcagagaaacttgcggcagaaaatgaggcagctcaaaagctt gcagctcagcaaaaagctggggcccaagcccaacctctacctgaagctcatgcaatggct tctagcactttagtccaaaatcaggatttaagatatgatcaggttcctgggccctatggc ttcatggcttcgcatcagacccagccaccccaacagccttatgttacctcaactgccatg catgatagcccctatcaccacacttctgatagctatcaacccgctcccaatgtctatcaa caagtcccctatgaattgcataatccccagcatgcttaccaacaacccccttctagccct taccaacaagcaccaagtctttcctaccagcagcccccttcatatcaaactggccccacc cctccatatcaaactggccccaatatgtcctatcaagcctccccaacatcatgctatcaa caagctccaagttcttatgtgatacctgcctgtccagtggcagcaagatcagattcggct tcaggaagtaccattgttgctgcaccaaaaccaaagttttctgccaaaaaaagtgatgca caagtgtggaaacctggcactgctaaaagtgctgataactag

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