Trichomycterus rosablanca: 134312344
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Entry
134312344 CDS
T09921
Name
(RefSeq) SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X1
KO
K24313
SH3 domain and tetratricopeptide repeat-containing protein
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
trn04131
]
134312344
Membrane trafficking [BR:
trn04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
134312344
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Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_1
TPR_2
TPR_8
TPR_10
SH3_1
ARM_TT21_4th
SH3_9
TPR_NPHP3
TPR_7
TPR_9
SH3_2
TPR_P4H
Motif
Other DBs
NCBI-GeneID:
134312344
NCBI-ProteinID:
XP_062850285
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All DBs
Position
4:complement(33783874..33810890)
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AA seq
1320 aa
AA seq
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MSSIDHQTRDRTSNGVSSDPHRFRRELSAEYSRHDLDLNKNMSTIYNMEYKHLRGSIKGT
SSVSEDNIPTVLGLQLAVAKGPDRLPADKDMQEVLCGKLRMLETDLANITTLITELSAHL
VSINSEERTIFITFKSFEEIWKFSTYHKMGFQHQCLENFLLDQNYWLNSLEQKDSGIEVY
FKQDTLNLMYRDFLMQEGSFFGSCTVNQMFDSSTSGSDLYLEKGVIAMFEPPFLGSGWTV
MSLADGSRGTKPRPAVEPVIPFHEWFLKSCPEWVLVGGEKACRDLPFQIAVGVCEATEPY
DGNGPDELSFEAGDRIVILGFLVTCFEWFMGKLEKTGDTGLVKSRLVKATDSLCESKEIF
LKTEHREIFTLEQDKIKEETLAFLKKTCQNDVATVYKLDCATSSPLQNSSSDSVHVDLKR
KMTSILNTTREPHEHEAALDSSHHLQTDEPIKSTDFLKETPCFTVRSEQDGTSPDGHYSL
LLFLGSRDHRPEFQLLYSAYPDFLLLHFQGHSDEEELVAYLGVARETARKKRMSWAQSRI
CFLLGQLCAGRSKYSQARVYYEEALSIPKDYFTDMYFLSAIYSNLAFVYFTQKNVDKYLA
LSERFAALMMAVCDCLTGTEDPEVFKFALKKAILSRNKPAEARVCFLLAKFYLKLEEGMN
AVPFIERLQILADKLPGTCDEMKSHGFLLLARLYSDYGLLHLAESSAQQACIQVSSSVAD
CLCGISLLLENARELHAVDIPTQVAPCLSRAAALKSLEPSLEYVHALCLSWLFDKHGMPN
RAVQFMCGLLDHTFTETLSQSDANTALIWLAWLYICDLQYNTAVVVLDSVLSSLPDHCTT
RLEGVVYNMRAIALRRTGDVKQAAENLQATLDVCEEFEDRYNWAIALANFGFLSLQVNAK
RVAEEHFTQAVELFSEQEHEGLELSFVAVLLELGKLYISQGFCEKGQIFYEWALLIAILY
ENPDSQLQATRHLCQLYSEVCPGEAQCIIYNEHQLNLLHQTEDRISEAGVLERISQLYLS
LGTEKGNRFALDYTKRSIGIFIDLGMRRKEAHGWLQAGKIYLILKQTELVDLYVQVAQDI
ALSTGDTLFILELLEAAGDVFFDSTQEKEKAICFYRDRALPIALKMNSLHSQLRLCNKLA
ELLLQLGQYGEAVEFAQTTLELSINLGDHLNERVAFHRLATLYHCLSQFELAEHHFLKAL
SLCPSLLEFDEEALYYVRVYKTLGDIIFYDLKDPFDAAGYYHLALAAAMDLGNKKSQLEL
CTRLATIYHNFLMDRELSLYFYQRARAFAADLNIRRVNLAPDQSFRTTSQYRTTAIQETR
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtatcgatcaccaaacccgcgacaggacgagtaacggggtcagctcggaccct
cacagatttcgtcgtgaactgtctgctgagtactcacgccatgacctggatctgaataaa
aacatgtccacaatctacaacatggaatataagcacttgagaggaagtataaaaggaaca
tcatcagtttctgaagacaacatccccacagtgctgggattacagctggctgtggcaaaa
ggaccggaccggcttcctgctgacaaggacatgcaggaagttctgtgcgggaagctacgc
atgctggagactgaccttgctaatatcacgaccctaatcacggaactctctgctcatctg
gtgtccatcaacagtgaagaaagaactatatttatcacttttaaatcatttgaagaaata
tggaagttcagcacctaccacaaaatgggtttccagcatcagtgtttggagaactttcta
ctggaccagaattactggctgaattctttagaacagaaggactcaggaattgaggtctac
tttaaacaggacacccttaatctaatgtacagagactttttaatgcaggaaggatcattt
tttgggagctgcacagtaaatcagatgtttgatagttccacatcaggcagtgatctttat
ctggagaaaggggttatagccatgtttgagcctccattcctgggctctgggtggactgtg
atgtccttggcagatggatcaagaggaactaaacctaggccggcagtggaaccggtcatt
ccatttcatgagtggtttttgaaatcctgtcctgagtgggttttggtggggggtgaaaaa
gcatgccgtgaccttccatttcagattgctgtaggtgtctgcgaggcaacagaaccatat
gatggtaatggacctgacgagcttagctttgaggctggtgatcgaatcgttatcctgggc
ttcctggtaacctgttttgagtggttcatgggcaagctggagaagactggtgacacagga
ctcgtcaaaagccgccttgtcaaagcaactgattctctttgtgaatcgaaagaaatcttt
ttgaaaactgaacacagagaaatcttcaccttggaacaagacaagattaaagaggaaact
cttgcctttttgaagaaaacatgtcaaaatgatgttgctacagtctacaaacttgattgt
gcaacttcaagtccacttcaaaacagctcttctgacagtgtgcatgtagacctgaaaaga
aaaatgacaagtattttaaatacaacgagggagccacatgaacatgaagctgcactggat
agttctcatcatctccaaacagatgagcccattaaatccacagacttcctaaaagaaact
ccatgctttactgttcgttcagaacaggatggaaccagcccggacggacactattctctt
ctgcttttcctaggcagccgtgaccatcggccagagttccagctgctttacagtgcctac
ccagatttcctcctgttgcatttccagggtcattcagatgaagaggagttggttgcatat
ttaggagttgcacgggaaacagcaagaaagaagcggatgtcctgggcacaaagcagaatt
tgtttcctcttgggtcagctttgtgcagggaggtcaaagtactcccaggcacgcgtctat
tacgaggaagccttaagcatacccaaagactatttcacagacatgtactttctttcagcc
atctactctaacctcgcctttgtctattttacacagaagaatgtggacaagtatcttgct
ttgtcagagcgctttgctgctttaatgatggcagtctgtgactgtttgactggcacagag
gatccagaagtgttcaagtttgcactaaagaaggccattctatccaggaataaaccagca
gaagccagggtctgtttcctgctagccaaattttatctgaagcttgaagaggggatgaat
gcagtgccttttattgaacggctgcagattttggctgataagctgcctggcacctgtgat
gagatgaagagtcatggtttcttactgttagcacggctttatagtgactatggtcttctt
caccttgctgagagctcagcacaacaagcgtgtattcaggtctcttcctcagtggctgac
tgtctttgtggcatatcattgctgttagagaatgcccgggaattgcatgctgtcgacatc
ccaactcaggtggctccatgtttgtcccgagctgctgctttaaaatctcttgagcccagc
cttgaatatgttcatgctctgtgtctctcctggctctttgacaagcatggcatgcctaat
agggcagttcagttcatgtgtggcctccttgaccacacatttacagaaacactcagccag
tctgatgccaacacagctctgatatggctggcgtggctgtatatctgtgacctgcagtac
aacactgcagtggttgttctggactcagtcctgtcttcattgcctgaccactgcacaaca
cgcctggaaggtgttgtctacaacatgcgtgccattgcattaagacgtaccggtgatgta
aaacaagctgcagagaacttacaagctactttggatgtctgtgaggagtttgaagacagg
tacaactgggccatagcgctggccaattttggctttctaagtctgcaggtcaatgcaaaa
agagtagcagaggagcattttacccaagcagtagagctgttctccgagcaagagcatgaa
ggacttgagctaagctttgttgctgtacttttagagctagggaagctctatatctctcag
ggtttttgtgaaaaagggcagatattctatgagtgggcattgctgatcgccatcctgtat
gaaaacccagacagtcagttgcaagccacccgtcatttgtgccaactgtatagtgaagta
tgcccaggcgaggctcagtgtattatttataacgagcaccagctgaacctgctacaccag
acagaagacagaatttctgaggcaggcgtcctagagaggatcagccagctctacctgagt
ctgggcacagagaaaggaaacagatttgcacttgactataccaaaagaagcatagggatc
tttatcgacctggggatgaggaggaaggaggcccatggctggctacaggcaggaaagatc
tacctgatcctcaaacaaactgagctagtggatctctatgtacaggtagcacaggacatt
gctttaagtacaggagacacacttttcatcctggagctactagaggcagcaggtgatgtg
ttttttgatagcacacaagaaaaagagaaagccatctgcttttacagggaccgagccctg
cctattgcactgaagatgaacagtttgcattctcagctcaggttgtgcaataagttagca
gagttgctgctacagctgggacagtatggagaagctgtggagtttgcacagactacatta
gagctcagcatcaatctgggtgatcacttaaatgagcgtgtggctttccatcgtctggct
acactctaccactgcctgagtcagtttgagctggctgagcaccactttttaaaagccctc
tcactgtgtccctcacttctggagtttgatgaggaggccttgtactacgtcagggtctac
aagacactaggagacatcatcttttatgatctaaaggacccatttgatgcagcaggttat
taccaccttgccctggcagctgctatggacctgggtaataagaagtcacagcttgagctg
tgcactcgtctggccaccatctaccacaacttccttatggaccgtgagctctcactgtac
ttctaccagcgtgcaagggcttttgctgctgacctcaatatccgccgcgtcaacctggca
ccagatcagagcttccgcaccacatcccagtatagaaccacagccatacaggagacaaga
tag
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