Trichomycterus rosablanca: 134312366
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Entry
134312366 CDS
T09921
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
trn
Trichomycterus rosablanca
Pathway
trn04510
Focal adhesion
trn04512
ECM-receptor interaction
trn04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134312366 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134312366 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
134312366 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
trn04147
]
134312366 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
trn00536
]
134312366 (col4a5)
Exosome [BR:
trn04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
134312366 (col4a5)
Glycosaminoglycan binding proteins [BR:
trn00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134312366 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
134312366
NCBI-ProteinID:
XP_062850325
LinkDB
All DBs
Position
4:37829982..37924552
Genome browser
AA seq
1672 aa
AA seq
DB search
MNKKFKSLLNLLLFISLCIGVQESESAACHGCGTGSKCDCTGVKGEKGDRGFPGLSGQPG
VPGFPGPEGPLGSLGEKGDDGLPGPPGPKGIRGPPGLPGFAGTPGIPGIPGQDGPPGPKG
IAGCNGTKGERGFPGGSGLPGLDGEPGPPGFSGQKGEPSDVIYSEDFGPKGEPGREGSPG
PKGQPGLPGLQGPVGPSGQRGYQGPPGLPGPSGPKGNMGLNFQGPKGEQGYQGVQGPPGP
PGQVDEFSRPTDVVIQQGEKGDRGPPGQTGFTGPPGLPGTSGGQKGGKGEPGELGKRGKP
GKDGDPGPPGYQGVKGDIGNPGLTGRDGERGDKGERGLTGPPGQVVIGPGNQIGQKGDPG
PSGLPGRKGESGSQGVPGPTGRPGTPGIGGQGPPGQPGFLGDKGLKGDEGQPGLPIPGPP
GRAGLPGQPGLPGPPGSSSPDNCIPGAPGLPGQLGDRGFPGEIGQKGEKGETCVNCFFNG
NPIPGPQGPPGPPGNPGFPGSPGPNGERGFAGGPGQPGIPGAPGSQGVPGPQGEKGDPGD
AIGGGVKGVKGDTGFPGSPGLPGPTGPSGRNGFPGPPGPKGAPGPLLAKGQPGPPGPPGL
TGPSGDRGSPGPPGYGPPGSLGEKGFQGVSGRPGNPGTPGQKGDPGETLSEKGERGNPGR
DGDSGLPGNPGNPGLSGQPGTPGFPGSKGEPGLLGIGLPGPPGSKGFPGIAGNPGTPGRP
GPPGVDGLPGNPGAPGPKGDPGFGIPGPQGPQGLPGSKGNPGPKGDPGFPGGPGSSGRPG
VNGAPGAKGEPGLGGAPGPQGPPGPPGFGVRGPLGPPGPNGPMGPPGLPGLNGEKGDPGP
PGLDLPGLPGDSGAPGLPGPSGPLGPPGNPGLPGQDGQPGYPGPKGDMGVMGTPGPAGNS
GIPGSLGAPGPKGDNGVPGRSGATGLPGLKGDKGDQGIPGPPGQMVDTFKGQKGEPGPPG
FTGGPGVKGIAGLRGDPGLPGLDGRPGSPGPPGPKGEPGNPGQPGPQGTPGFKGSMGEMG
LPGSPGIKGNPGQLGRSGASGSQGAPGFRGPKGEPGTPGFGLPGSPGAKGDPGTPGIPGS
QGPKGQSGPPGFSGTPGSPGQNGEPGPPGFQGAPGSPGAKGLNGVPGPPGIPGNAGKPGD
PGIFGRPGLPGGKGQAGLDGIPGAAGEKGEPGIPGYGVPGPPGSPGMPGTKGDPGLPGQP
GGPGYPGPKGEQGFSGSSGGPGPQGPPGAPGLPLQGPKGIQGPSGPPGRIGLPGPEGPRG
PPGTGGTKGEKGFTGTPGTPGFPGEKGDPGPPGFMGTFGSPGSTGLKGDIGLPGVIGFPG
PKGLSGLPGNPGRPGERGEIGSPGAPGEPGPVSAPIVVKGLRGPAGSPGQSGDRGLPGAQ
GLEGLAGQPGFPGDLGPDGPPGFSGSPGRKGDPGSSGQPGGRGLPGPPGSDGPQGQPGLP
GSASAAHGFLITRHSQTTEVPGCPSGTSIIYDGYSLLYVQGNERAHGQDLGTAGSCLRRF
STMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMEPIKGENIKPFISRCAVCEAPAMV
IAIHSQTIQIPKCPQNWDSLWIGYSFMMHTSAGAEGSGQALASPGSCLEEFRSSPFIECH
GRGTCNYYGNSYSFWLATIELSEMFRKPASETLKGGDLHQRVSRCIVCMKRT
NT seq
5019 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaaagtttaaaagtctgctgaacttgctgcttttcataagtctgtgtatagga
gttcaggaaagtgagtcggcggcatgtcatggctgtgggacgggctctaagtgtgactgc
actggagtaaaaggggagaagggtgatagaggttttccaggcctctcgggtcagccaggt
gtaccaggattccctggaccagaagggccacttggatctcttggagagaagggtgacgat
ggacttccagggccacctggacctaaaggaataaggggacctccagggctgcccggattt
gcaggaactccaggaattccaggtattccaggacaggatggccctccaggaccaaaagga
attgccggttgtaacggaacaaagggtgagagaggatttccaggaggttcaggtctccca
ggtttagatggagagccgggccctcctggtttttctggccagaagggagagcctagtgat
gtcatttattcagaagattttggcccaaaaggggaacctgggcgtgagggttcaccaggt
cctaagggacagccgggactgcctggattgcaaggtcctgttggtccttctggccagaga
ggttaccagggtcctcctggtcttcctggaccatcaggtcctaagggaaatatgggactg
aacttccaagggccaaaaggagagcagggttatcagggggtacagggacctccggggcca
ccagggcaagttgatgagtttagtagaccaaccgatgttgtgattcagcaaggagagaag
ggtgatcgtggaccacctggacaaactggatttactggccctcctggactgcctggaaca
tctggaggacagaaaggagggaagggtgagccaggagaacttggaaaacggggaaaacct
ggtaaagatggagatcctggtcctcctggatatcaaggcgtgaaaggagacattggtaac
cccggtttaacaggaagagatggtgaaaggggtgacaaaggtgagcgaggattaacagga
cctccgggacaggtggtaataggaccaggaaaccagataggacagaaaggagatcctggt
ccatcgggactccctggaaggaaaggagagtcgggttcacagggtgtcccaggcccaaca
ggtcgaccgggaactccaggtatcggaggtcaaggcccaccaggtcaacctggttttctg
ggagataaaggtctaaagggagatgagggacagcctggactccctatcccaggtccacct
ggaagagctggactaccaggacaaccaggacttccaggaccaccaggatcatcctctcca
gataactgcattccaggtgctcctggtcttccaggccagctgggtgaccgtggtttccct
ggagagattggtcaaaaaggtgaaaagggtgaaacatgtgtgaattgtttttttaatgga
aaccccattccgggaccacagggtccacctggacctccaggaaacccaggctttcctgga
tcccctggtcctaatggagaaagaggatttgctggcggtcctggtcaacctgggatacca
ggtgctcctggatcacagggtgtacctggaccacagggagaaaagggtgatcctggtgac
gccattggtggtggtgtaaagggagtaaagggagacacaggatttcctggctctccagga
cttcccggcccaactgggccatctggtcggaatggctttccaggaccacctggtcccaaa
ggagcacctggtcctcttctggcaaaaggtcagcctggccctcctggtcctcctggtctc
acaggtccttctggagacagaggctcccctggtcccccaggatatggcccacctggaagt
cttggagagaaaggattccagggtgtgtcaggaaggccaggaaaccctggaacaccaggc
caaaaaggtgatccaggtgaaactctttctgaaaaaggggaacgtggaaatccaggacgt
gatggagactctggtctaccaggaaacccaggtaacccaggtttatctggacaacctgga
acccctggatttcctggttccaaaggagagcctggtctcctgggcattggcttacctgga
cctccaggttctaaaggtttcccaggtattgcgggcaatccaggaacacctggaaggcct
ggacctcctggagttgatggactacctggcaaccctggagcccctgggcctaagggagac
cctggttttggtattcctggtcctcagggtccccaaggtttgcctggcagtaagggtaat
cctggacctaaaggtgatcctggtttccctggaggtcctggttcctcgggtcgaccaggt
gttaatggtgctcctggagccaaaggtgaacctggtttaggtggtgcccctggtcctcaa
ggccccccaggccctcctggttttggtgtaaggggtccccttggaccccctggacctaat
ggccctatgggccctcctggtcttcctggtttgaatggtgaaaaaggagaccctggaccc
cctggtctggatcttccaggtttgcctggtgactcaggagccccaggcttacccggacct
tctggtccgttaggtcctcctggtaacccaggtctccctggtcaagatggacaacctgga
taccctggaccaaagggagacatgggtgtgatgggtactccaggacctgctggtaactct
ggaatccctggttccctaggtgcacctggaccaaaaggtgacaatggtgttcctggacgg
tcaggagccacaggtctacctggacttaagggagataaaggtgatcaaggtataccaggt
ccaccaggacaaatggttgatacttttaaaggacaaaaaggagaaccaggaccacctggt
tttactggaggtccaggagtaaaaggtattgctggtcttcgtggtgatcctggtctccct
ggactagatggacgtcctggaagccctggacccccaggtcccaagggagagcctggaaac
ccaggacaaccaggacctcaaggcaccccaggatttaaaggcagtatgggtgagatgggt
ttgccaggttctcccggaattaaaggaaaccctggtcaacttggccgttctggggcttct
ggttctcaaggagcaccaggattccgaggaccaaaaggagagcctggaacaccaggcttt
gggctgccaggatctccaggagccaagggtgatcctggcacacctggtatccccggaagc
caagggccaaaaggacaatcaggacctccaggattttcaggaacccctggtagtcctggc
cagaatggtgagccaggacctcctggattccaaggtgcacctgggagtcctggtgctaaa
gggttgaatggagttccaggtcctccaggtattccaggaaacgcaggaaagcccggagac
ccaggcatttttggtcgacctggtttacctggtggaaaaggtcaagctggtttagatggt
attcctggagcagcgggagaaaagggagagccaggtattcctggttatggagtcccaggt
cctcctggttcccctggaatgccaggtaccaaaggagaccctggtctacctggccagcct
ggtggccctggttacccaggaccaaaaggtgaacagggattttctggttcatcaggcggt
cctggtcctcaaggccctcctggtgctcctggtctgcctctgcaggggcctaaaggtatc
caaggtccttctggaccaccaggacgaatcggtcttcctggtccagaggggccccgcgga
ccaccaggtactggaggaacgaagggagaaaagggtttcactggaacccctggaacacct
ggcttccctggagagaaaggagaccctggacctcctggctttatgggtacttttggttct
cctggatctactggacttaaaggagacatcggccttcctggtgttataggattcccaggt
cctaaaggtctgtctggtttgcctggaaatcctggacggccaggagaacgtggtgaaatt
ggctctccaggagctcctggtgagccaggtccagtttcggctccaattgtggtgaagggt
ttgagaggcccagcaggttcacctggccaatcgggagatcgaggactaccaggagctcaa
ggactcgagggcctggcaggtcagcctggtttccctggtgacctgggccctgacggacca
ccaggattcagcggctcccctggaaggaagggagatccaggatcatccggtcagccaggt
ggtcggggtttacctggccctcctggttcagacgggccccagggtcaaccaggtcttcca
ggttcagcatcagcagcccatggattcctgattacacgtcacagccagactacagaggtg
ccaggctgcccttctgggacctcaatcatctatgatggctactctttactctatgtgcag
ggtaatgagagggctcatggccaggacctgggtactgctggaagttgcctacgacgtttc
agcaccatgccttttatgttctgcaacatcaacaatgtgtgcaactttgcctcccgaaat
gactactcttattggctgtctacacctgagccgatgcccatgagcatggaacccatcaag
ggcgagaacatcaaaccctttatcagcagatgtgctgtatgtgaagctccagcaatggtg
attgcaatccacagccagaccatccagataccaaaatgcccacagaactgggactctttg
tggattggctattccttcatgatgcacactagtgcaggtgctgagggatctggtcaggct
ttagcctcacccggatcctgtctggaggaattccgctcctctccctttattgagtgccac
ggccgcggaacctgcaactactacggaaactcctacagcttctggctggccactatcgaa
ttgagtgaaatgttcaggaagccagcatctgagaccctgaaaggaggagatcttcaccag
cgtgtgagccgctgtattgtgtgtatgaagaggacgtaa
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