Trichomycterus rosablanca: 134312410
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Entry
134312410 CDS
T09921
Symbol
acin1b
Name
(RefSeq) apoptotic chromatin condensation inducer 1b isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
trn
Trichomycterus rosablanca
Pathway
trn03013
Nucleocytoplasmic transport
trn03015
mRNA surveillance pathway
trn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134312410 (acin1b)
09122 Translation
03013 Nucleocytoplasmic transport
134312410 (acin1b)
03015 mRNA surveillance pathway
134312410 (acin1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trn03019
]
134312410 (acin1b)
03041 Spliceosome [BR:
trn03041
]
134312410 (acin1b)
Messenger RNA biogenesis [BR:
trn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
134312410 (acin1b)
Spliceosome [BR:
trn03041
]
Complex C
Other components
EJC/TREX
134312410 (acin1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
134312410
NCBI-ProteinID:
XP_062850402
LinkDB
All DBs
Position
4:42334204..42369281
Genome browser
AA seq
1640 aa
AA seq
DB search
MAELEDVTLDGKPLHSLRVADLKAALEQRGLAKSGQKNALIKRLKGALMLENLQRTSTSH
TGLQPNSQIGEEMSQNSFIKQYLAKQQELLRQRMEREAREAAEADDTNSPAGPEEDEHTA
ANDNSSYTPDKHHIVASRSSVHRTEDGEGEQLDAHRPDAGTASVSQSSPDATTGKTWCPS
FSQEETATPSPPRAVASLSVRVVGQPERQGVPLVVPRPQEKEGTAPVEAGPAHPVPQLSR
SARAQDESDEEEDDDDDDSDEDDDWGPSSRRKKNVRVTPQRSRRKLQPPQHIPPHHSPLQ
LRQPTPPPSPPPELSFPLPDTPKQSPPDQDEPEAPVDNSVSSSPSPQRQESSSSSRSSSP
EPPPKRRPGPLSLLVRKMESEGAFDAAKKKEEEEDAAAEEQVEAGTGMVLHTKEATVNDS
CDAEMTPDVQASPEKALPEVSESVPTMPSAAESSPQEIVKEKEAKQELKERPTLDEKEKQ
DKEKELEKSTESAHSSLKREREASTSHDSTSFHHTSPTTSTPGVAKRKRIFSEVPPPEWL
LSPSKPEQVSVLRAGPHHASADIDMEAEASPLVLLKEQNKEENKETKMASQQASDEMEVG
TEKLATSQGSEKAEEKKAEIEHVESSLASEATIEKQAESEKVALSQAFTSETEKTKEIAS
VTEDLASSPELASPQTPEAAEKMKTIMAVSRPTEVMEQATEKVAQESDAKTEEVAPQATE
VMKPITETPACPQASEAAVESHEGETEKQASVLLSNATEEIKEKLASPQASEAALEMDSA
TKLPSPEKSKAAEEIEAVTEKPKCPDASEAETEKVASSQSSKGAEEIEEPEQVASAQASE
AAEEMKKAETKQLASPPSSQAAEEIKEKEAEKPGSPQAAEAPEPMEDEAETASESRQEMQ
KAEMPEKPASQHAASADDEMQEADPDNRASPCPVDADEEMQESEPEKPVSRPVAEDSSVP
PRSPSGEKEKSEKTKEKSRRRKSSEWRSSSSSQSSSSDSDSESSSSSSSSSSSASSSTSS
SREKPSPPIQKQDEEEKPRRTDNTVEEKRKTSREVKQATVAEPTAPVSMELQEQPESESA
LAHPASQEAPETSESRTDEITTPKVIAARKISLITSKSDGASVEAESGSGAGRKRRWGSS
TAVTAKKPSISITTESLKSLIPDLKPLQEAVVDLHPDEGRFSGDEESTQQSERNEDQGLQ
IRRTVTQVVPSEGQENGQKEKEEEEEEEEEPMEEKEKPLRKQRRESSSEVAMETPEGDTK
KVTPNDSVVRRSISQQKVAVSITIDDPVRTGRQLSPPRGKTSNIIHICNLVRPFTLGQLK
ELLNRTGSVVEEGFWIDKIKSHCYVTYSSTEEAVATREALHGVKWPSSNPKVLRVDFCEK
DELDFHKGLLTGEGPRAPPAATRPAAPPPLLPPTREREREKEREGGATGVKDQWAERERE
MERRERARSEREWDRDKVRDFNRDERDAAKRSRSREKDRRRKERGKSKEKKSEKKDKPEE
PPAKLLDDLFRKTKAAPCIYWLPLTEEQATKRNQERAERLKEREKIRKELEEEEKKREEE
RKERARGRERDAANPASGGGGSSSRPSEGEKDKERERDRAREKEGERRRDSNRGRGGDSR
PTGGSRRSRSHSNPSRDRRR
NT seq
4923 nt
NT seq
+upstream
nt +downstream
nt
atggcggaactcgaagatgttacgctagatgggaaaccgcttcattcgcttcgtgtggcg
gatttaaaagctgcactggagcagcgagggctggcgaaaagtgggcagaaaaatgcgctc
atcaagcgactgaaaggggctctcatgttggaaaacctacagagaacctccacctctcac
acaggtctgcagcccaactcgcagatcggggaggagatgagccagaacagctttatcaaa
cagtatcttgccaagcagcaagagctccttcgccaaagaatggaaagggaggcacgggag
gcagctgaggcagacgatacaaacagtcctgcaggcccagaggaggacgaacacacagct
gccaacgacaacagttcctacacgccagacaagcatcacattgtagcatctcggtcatct
gtacatcgaacagaagacggggaaggcgaacagctggacgctcacaggccagatgctggg
acggcctctgtatcacagagctccccagatgccaccactgggaagacctggtgcccctca
ttctcccaggaggagactgccactccctccccgcctcgtgcagttgcctctctctctgtg
cgtgtagtcggtcagccagagcgacagggtgtgccactggttgtgcctcgcccacaagaa
aaagaaggcactgcacctgttgaagcgggccctgcccatccagtgccacagctcagccga
tccgctcgcgcacaagacgaaagcgacgaagaggaggatgacgatgacgacgacagcgat
gaggatgatgactggggtccttcgtctcgcaggaaaaagaacgtccgtgttactccgcag
cgctcgcgccgcaagcttcagcctcctcaacacattccaccacatcattccccactacag
cttcgtcagcccacacctccaccatctccgcctccagagctttccttccctctgcctgac
actcccaaacagagtcctccagaccaggatgagccggaagcaccagtggataattctgtc
tcatcttcaccttccccacagagacaagaatcaagttctagctccagatctagcagccct
gagccgcctccgaagcgcaggcccggaccactcagcctgctagtgcgcaagatggagtct
gagggagcatttgatgctgcgaagaaaaaggaagaggaggaagatgcagcagcagaggag
caggtagaggctggaacaggaatggttctgcacactaaagaagcaactgttaatgatagc
tgcgatgctgagatgactcctgatgtgcaagcttcgcctgagaaggcactgcctgaagtt
agtgagtcagtaccaacaatgccttctgctgctgaaagtagccctcaagaaatagtaaag
gaaaaagaggctaagcaggagctgaaagaaagaccaacgctagacgaaaaagaaaagcag
gataaagaaaaagagctagagaaatcaacagagagcgctcattcatcattaaaacgcgag
cgggaggcatcaacgtcccacgactctaccagcttccatcatacttcacccaccacctcc
acacctggtgttgccaagcgaaaacggatcttctctgaagttcccccacccgaatggctc
ttgtctccttccaaacctgagcaggtgtctgtcctcagggcaggacctcatcatgccagt
gcagatatcgatatggaagctgaagcttctcctttggttttacttaaggagcagaataaa
gaagaaaataaagaaactaagatggcatctcaacaggcgtcagatgaaatggaggtagga
acagaaaaattggcaacttcacagggatctgagaaagctgaagaaaagaaggcagaaata
gagcatgtggaatcttcgttggcatctgaagccacaatagaaaagcaggcagagagtgaa
aaggtggcactttcacaggctttcacatcagaaacagaaaagacaaaagaaattgcatca
gtaactgaagacttggcatcttcacccgaacttgcttctccacagacacctgaagctgca
gaaaaaatgaaaacaatcatggcagtatccagacccacagaggtaatggaacaagcaaca
gagaaggtagctcaagaatcagatgctaaaacagaggaggtggcacctcaagccacagaa
gtgatgaagcctataactgagacaccagcatgtccccaggcatctgaagcagcagtagaa
tcacatgagggagaaacagaaaaacaggcgtctgtgctactatctaacgctacagaagaa
atcaaagagaaactggcatccccgcaggcatctgaggcggcactagaaatggattcagca
acaaagctgccatctccagagaagtctaaagcagcagaggaaattgaggcagtgacagag
aagccaaaatgcccagatgcatctgaagcagaaaccgaaaaggtggcatcttcacagtca
tctaaaggggcagaggaaatagaagaaccagagcaggtggcatctgcacaagcgtcagag
gcagcagaagaaatgaagaaggcagaaacgaagcagcttgcatccccaccgtcatcccaa
gcagcagaggaaataaaagagaaagaggcagaaaagcctggatccccacaggcagccgaa
gccccggaaccaatggaagacgaagcagagacggcgtctgagtcgagacaagagatgcag
aaagcagagatgcctgagaagcccgcatctcaacatgcagcctctgcagatgacgaaatg
caggaggcagacccagacaatcgagcatctccgtgtccagttgacgcagatgaagaaatg
caggagtccgagcccgagaagccagtgtctcgaccagtggctgaggattcttctgtgccg
cctcgatctccatcaggagaaaaagagaaatcagaaaaaacaaaggagaaatcccgaagg
agaaaatcatctgaatggcgctcatcttcctctagccagtcttcatcctctgactcagat
tcagaatcctcctcttcgtcctcctcctcttcctcatcagctagttcctcaacctcatca
tcacgggagaaacccagcccacctattcaaaagcaggatgaagaggaaaaaccaagacgg
acagacaacacggtcgaggagaaaagaaaaacttccagggaagtgaagcaagccacagtc
gcagagcccacagctcctgtctctatggagctccaggaacagcccgagtctgagagtgca
ctcgcacatcctgcctcacaggaggcaccagagaccagcgagtcgcgcactgatgagatc
accactccaaaagtgattgccgctcgcaagatttcactcattacttctaagtcagatgga
gcttcagtggaggcagagtctggaagtggagctggcagaaagaggaggtggggatcaagt
acagcagtcactgctaagaaaccctcaatcagcatcactacagaatctcttaagtctctg
atcccagacctcaagccgctgcaggaggccgtggtggaccttcacccagatgaaggccgt
ttctctggggatgaagaatcaacccagcagagtgagcgcaacgaggaccaagggctccaa
atcagacgcactgtaacgcaggttgttccatcggagggacaggagaacggacaaaaagaa
aaagaggaggaggaagaggaggaggaggagccgatggaagagaaagagaagcccctaaga
aaacagaggagggaaagctcatcagaagttgctatggaaacaccggagggagacaccaag
aaggtgacccccaatgattctgtggtgagacgctctatcagtcagcagaaggtcgctgtg
tccatcaccatagatgacccagtgcgaacaggccgccagctctcacctcctcgtggcaaa
acatccaacattatccacatctgcaacctggttcggccttttactttaggtcagctgaag
gagctgttgaatcggaccgggtccgtggtggaggagggtttttggattgataaaatcaaa
tctcactgctatgtcacttactccagtacagaggaggcagtagctactcgtgaagctctg
catggtgtcaagtggccctccagcaatcccaaagtgcttcgagtggacttctgtgaaaag
gatgagctggacttccataaaggcctgctgactggcgagggcccacgagcccctccagct
gcaacccgccctgctgcccctccccctctcttgcccccaactcgtgagagagagcgggaa
aaggagagagaaggtggcgcgacaggagtcaaagatcagtgggctgagagggaacgagag
atggagcgtagagaaagagcacgttcagagcgagagtgggatagggacaaagtacgcgac
ttcaacagagacgaacgggacgcagccaagaggtcacggtcgcgtgagaaggacaggaga
cgaaaggagcgaggcaagagtaaggaaaagaagtctgagaaaaaagacaaaccagaggag
cctcctgccaaattgctggatgacctgttccgtaaaactaaagctgctccctgtatatac
tggctaccacttactgaggaacaggcaactaaaaggaaccaggagcgagctgagcggttg
aaggagcgagagaagatcagaaaggaactggaggaggaggagaaaaagagggaggaggag
aggaaggagcgtgcacgaggacgagagcgagacgccgcgaaccctgcgagcggaggtggt
ggaagctcgagtcggccctcagagggagagaaggacaaagagagggagcgggaccgggct
agagagaaggagggcgagaggaggagagacagcaacagaggccgaggtggagactccaga
cctacggggggcagcaggcgctcacggagccacagcaacccctccagggacagacggcgc
tga
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integrated database retrieval system
