Trichomycterus rosablanca: 134314232
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Entry
134314232 CDS
T09921
Symbol
pdlim1
Name
(RefSeq) PDZ and LIM domain protein 1
KO
K23353
PDZ and LIM domain protein 1/2/3/4
Organism
trn
Trichomycterus rosablanca
Pathway
trn04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
134314232 (pdlim1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
trn04990
]
134314232 (pdlim1)
Domain-containing proteins not elsewhere classified [BR:
trn04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
134314232 (pdlim1)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4749
PDZ
LIM
PDZ_6
PDZ_2
CASP_C
Motif
Other DBs
NCBI-GeneID:
134314232
NCBI-ProteinID:
XP_062850857
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All DBs
Position
5:complement(5784232..5798730)
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AA seq
321 aa
AA seq
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MQLRIVLQGPGPWGFRLVGGKDFEQPLTISRVTPGSKAAQANLCIGDMIVAIDGEPTEGM
THLEAQNKIKCCLEEMALSIDRSESKMWSPLVNEDGKSHPYKMNLASESQDVKHIGSAHN
RSALPFNSPATKVVTNQYNNPAGLYSSENIKSFNRAVDDVKTTVPSSESSHKPDPSKPVQ
QKHPVTAESEVYKMLQENQESAEPPRQSASFKVLQEILETGDSDKPSGFRSVKAPSTKFA
SSVGNTEKLSVCDKCGSGIVGMIVKLRDKFRHPECYVCTDCDVSLKQKGHFFVEDKIYCE
KHARERMTPPEGYDVVTVFPK
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
atgcaactgcggattgtattgcaaggtcctggaccgtggggatttcgactggtcgggggt
aaagatttcgagcagcccctgactatttcacgggtgacgccaggaagcaaagcagcccag
gccaacctttgcataggggatatgattgttgccatagacggagagccgacagagggtatg
actcatctggaagcccagaataaaatcaagtgctgtttggaggaaatggccctctccatt
gacaggtctgaatcgaagatgtggtctcctcttgtgaatgaggatgggaaaagccatccg
tacaaaatgaacctggcatcagaatcacaggacgtgaaacacattggctctgctcacaac
aggagtgctctcccattcaattcacctgcaaccaaggtggtcacaaaccagtacaataac
cctgcaggcttgtattcctctgagaacatcaagagttttaatcgtgccgttgatgatgtc
aagaccaccgtcccatccagtgaatcaagccataagccagatccttccaaacctgtccaa
caaaaacatccagttactgctgaatctgaggtttataaaatgctgcaggagaaccaagag
tcagctgagcctccacgccagtctgcatcattcaaagtcctgcaggagatccttgagact
ggtgattctgataaaccctccgggtttaggagcgtgaaagcaccctcaacaaaatttgct
tcctctgtgggcaatactgagaaactatccgtttgtgacaaatgtggatcagggattgtg
ggaatgattgtaaagctgcgggacaagttccgccaccctgaatgctacgtctgcacggac
tgtgatgtcagtctgaaacagaagggacacttttttgtcgaggacaagatttactgtgag
aagcatgcacgtgaacgaatgactccacccgagggatacgatgttgtcaccgtcttccca
aagtag
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