Trichomycterus rosablanca: 134314416
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Entry
134314416 CDS
T09921
Symbol
prkn
Name
(RefSeq) E3 ubiquitin-protein ligase parkin isoform X1
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
trn
Trichomycterus rosablanca
Pathway
trn04120
Ubiquitin mediated proteolysis
trn04137
Mitophagy - animal
trn04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
134314416 (prkn)
04120 Ubiquitin mediated proteolysis
134314416 (prkn)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
134314416 (prkn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
trn04131
]
134314416 (prkn)
04121 Ubiquitin system [BR:
trn04121
]
134314416 (prkn)
03029 Mitochondrial biogenesis [BR:
trn03029
]
134314416 (prkn)
Enzymes [BR:
trn01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
134314416 (prkn)
Membrane trafficking [BR:
trn04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
134314416 (prkn)
Aggrephagy
Other aggrephagy associated proteins
134314416 (prkn)
Xenophagy
Other xenophagy associated proteins
134314416 (prkn)
Ubiquitin system [BR:
trn04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
134314416 (prkn)
Mitochondrial biogenesis [BR:
trn03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
134314416 (prkn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
IBR_2
ubiquitin
IBR
IBR_1
Rad60-SLD
Dsc3_N
Motif
Other DBs
NCBI-GeneID:
134314416
NCBI-ProteinID:
XP_062851080
LinkDB
All DBs
Position
5:26550233..26732620
Genome browser
AA seq
452 aa
AA seq
DB search
MIVYVRFNSSHGFPVEVEEGARVSELKEAVGRLQGVQPDQLRVIFAGRELGSDSTLQGCD
LPEQSTVHVVLPPAGTERRLEQVLQRRLSRGVDSLTRLDLSASRLPTTSIGLAVILQNED
SNMQSEPKPLSTFYVFCKTECRAIQPGKLRVRCRTCKQGTLTLSRGPSCWDDVLLPDRIH
GVCQSPNCDGRVAEFYLKCAAHPTCDNDTSVPLDLIMTNVRHVPCIACTDVVSPVLVSQC
AERHVICLDCFHTYCMTRLNERQFIHDLVVGYSLPCAAGCPDSLIKEVHHFRVLGDEQYE
RYQRYAAEECLLQMGGVLCPAPGCGAGLLVEDDRRRVHCELKEGLGCGFVFCRDCKEEYH
EGECRQHFAPAAGGAMQGYVVDENAALRARWEQATKDIINETTRPCPKCRVPVEKNGGCM
HMTCPRAQCKFQWCWICRVEWNRECMGNHWFG
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgatcgtctatgtgcgttttaactccagtcacggatttccagtggaggtggaggagggg
gcacgtgtgtctgagctgaaggaggctgttgggcgtctgcagggtgttcagcctgatcag
ctgcgggtgatttttgccggccgtgagctcggaagtgattctacacttcagggctgtgat
ctgccggagcagagtacggttcacgtggtgctgcctccagctggtacagagcgcaggttg
gaacaggtgctacagcgcagattgagcagaggagtagacagcttaacccgactggacctc
agtgcttcacgactgcccaccacttccattggcctcgcggtcattctgcagaatgaggac
tcgaacatgcaatcagagcccaaacccctcagcactttctatgtcttctgtaagacggaa
tgtagagccattcaacctgggaaactgcgagtgagatgccgaacctgcaaacaaggaacc
ctcacactcagccgaggaccgtcgtgttgggatgatgtccttttgccagacagaattcat
ggagtgtgccagtctccaaactgtgacggcagagtggcggagttttatttaaagtgtgct
gcccaccccacttgtgataatgacacttcagtgccactggacctgatcatgactaacgtg
aggcacgtcccctgcatcgcctgtacagatgttgtgagtcctgttctggtgtctcagtgt
gctgagcgtcatgtgatctgtctggactgcttccacacttactgcatgacccgactgaac
gaacgtcagttcatccatgacctggtggtcggctactctcttccctgtgctgctggatgt
cctgactctctcattaaagaggtgcaccatttccgggtcctgggagacgagcagtatgaa
cgctaccagcgttatgcggcagaagagtgtttgctgcagatggggggagttctttgcccc
gctccaggctgcggggctggtcttctagtcgaggatgatcgccgaagggtgcactgtgag
ctaaaagaaggccttggctgtgggtttgtattctgccgggactgtaaggaggagtaccat
gaaggagagtgcaggcaacattttgccccagcagctggaggagccatgcagggttatgtg
gtggatgagaacgctgcgctgcgtgcccgctgggaacaagccacaaaggatatcataaac
gagaccacacggccctgtcccaaatgcagagttcctgttgaaaagaatggtggctgcatg
cacatgacgtgtcctcgtgctcagtgtaagttccagtggtgttggatatgtcgtgtggag
tggaacagagagtgcatgggcaatcactggtttggatga
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