Trichomycterus rosablanca: 134314623
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Entry
134314623 CDS
T09921
Symbol
smarca5
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
trn
Trichomycterus rosablanca
Pathway
trn03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
134314623 (smarca5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
trn03021
]
134314623 (smarca5)
03036 Chromosome and associated proteins [BR:
trn03036
]
134314623 (smarca5)
Transcription machinery [BR:
trn03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
134314623 (smarca5)
Chromosome and associated proteins [BR:
trn03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
134314623 (smarca5)
RSF complex
134314623 (smarca5)
WICH complex
134314623 (smarca5)
B-WICH complex
134314623 (smarca5)
NORC complex
134314623 (smarca5)
BRF complex
134314623 (smarca5)
NuRF complex (fruit fly)
134314623 (smarca5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
HAND
Helicase_C
ResIII
DEAD
HDA2-3
Myb_DNA-binding
DBINO
AAA_14
Motif
Other DBs
NCBI-GeneID:
134314623
NCBI-ProteinID:
XP_062851360
LinkDB
All DBs
Position
5:46367201..46393256
Genome browser
AA seq
1033 aa
AA seq
DB search
MSETEGSVVERQREEESDQPGSAQDGASDAGHDEASEAAQDEGEQSSSPDEEPKVEQSAG
YEEKVKTDRTNRFEYLLKQTEVFAHFIQPAAQKTPTSPLKMKPGRPRIKKDEKQNLLSAG
DNRHRRTEQEEDEELLSESSKASNVCTRFDDSPSYVKSGKLRDYQVRGLNWLISLYENGI
NGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLYNWMIEFKRWVPSLRAVC
LIGDRDERTAFIRDTLLPGEWDVCVTSYEMLIIERAVFKKFNWRYLVIDEAHRIKNEKSK
LSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSSQDFDSWFDTNNCLGDQK
LVERLHTVLRPFLLRRIKADVEKSLLPKKEVKMYIGLSKMQREWYTKILMKDIDILNSAG
KMDKMRLLNVLMQLRKCCNHPYLFDGAEPGPPYTTDLHLVVNSGKMVVLDKLLPKLKEQG
SRVLIFSQMTRVLDILEDYCMWRNFGYCRLDGQTPHEERQISINTFNEPNSSKFLFMLST
RAGGLGINLATADVVIIYDSDWNPQVDLQAMDRAHRIGQKKQVCVFRFITENTVEERIVE
RAEMKLRLDSIVIQQGRLVDPNMNKLGKDEMLSIIRHGATHVFASKESEISDEDINAMLE
RGEKKTEELKEKMSTLGEGSLRNFTMDTENSVYNFEGEDYREKKKVITNWIEPPKRERKA
NYAVDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKV
PRNPDLPNAAQVQKEEQAKIDEAEPLNEEELEEKENLLSQGFTIWNKRDFNQFIKANEKW
GRDDIENIAREVEGKTPEEVMEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISIKKA
LDSKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKESVYDELRQCIRNS
PQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEKEKAEKKKRGPRTSSAQKRKPDG
TSDGRGRKKKLKL
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagaccgagggcagcgtggtggagagacagcgggaagaggagagtgatcagccc
ggttcagcacaggatggtgcctcagatgccggacatgatgaagcatcagaagcagcacag
gatgaaggggaacagtcatcgtccccggatgaagagccgaaggtggagcagtcggctggc
tatgaagagaaagtgaaaacagaccgaaccaacagattcgagtacctgctgaagcagact
gaggtgtttgctcacttcatccagcctgctgcacagaagactcctacatctcctctgaag
atgaaaccaggtcgtcctcgcatcaaaaaagatgagaaacaaaacctcctctctgctggg
gataatcgtcaccgtcgcactgagcaggaggaagacgaggagctgctcagtgagagcagt
aaagcttctaatgtgtgcacacgttttgacgactctccatcctatgttaaatctggcaaa
ctccgagattatcaggtccgtggactgaactggctgatttccctttatgagaatggaatc
aacggcatcctcgcagatgaaatgggtctgggaaagactttgcagaccatttctctgttg
ggttacatgaagcattacagaaacatccctgggcctcacatggtgctggtgcccaagtcc
acactgtataactggatgattgagtttaagcgttgggtgccctcgctccgagccgtctgc
ctcattggagacagagatgagagaacggcctttattcgggacacactcctgccgggtgag
tgggacgtgtgcgtcacatcttacgagatgcttatcatcgagagggccgtcttcaagaag
ttcaactggaggtacttggtcatagacgaggcccatcgtatcaagaacgaaaaatctaag
ctctcagagattgtgcgcgagttcaagaccactaaccgcctgctgctcactggaacacct
ctgcagaacaatctgcacgagctgtgggctctgctcaacttcctcttgcctgatgtgttc
aactcctctcaggattttgattcctggtttgacacaaacaactgtcttggagaccagaaa
ctggtagagcgtctgcacacagtattgcgtcctttcctgctaaggcgtatcaaagctgac
gtggaaaaatcgctgcttccaaagaaagaagtcaagatgtatatagggctcagcaagatg
cagagagaatggtacacaaagatcctgatgaaggacatagacattctgaactcggcaggg
aagatggataagatgcgtcttctaaacgtgctgatgcagctcaggaagtgctgtaatcat
ccgtacctgtttgatggggctgagcctggtccaccttacaccactgacctccatctggtc
gtcaatagcggcaagatggtcgtcctggacaaactgctgcccaaactaaaagagcaaggt
tcacgtgtgctgatcttcagccagatgaccagggtgctggacatcctggaagactactgt
atgtggcgtaactttggatactgtcgcctggatggacagacccctcatgaagagagacag
atctccattaataccttcaacgaacccaacagctccaagtttctcttcatgctgagcacc
agagctggagggctgggaattaacctggcgaccgccgacgtggtcattatttacgactct
gactggaatcctcaagtggacctgcaggcgatggaccgtgctcacaggattggtcagaaa
aagcaggtgtgtgtgttccgcttcatcactgagaatactgtagaggaaaggattgtggaa
cgtgctgaaatgaaactccgtctagactccatcgtcatccagcaaggtagattggttgac
cccaacatgaacaagctggggaaggatgagatgctgtccattattcggcatggtgccact
cacgtctttgcctcaaaagagagtgaaatctctgatgaagatattaatgccatgcttgag
agaggagagaagaagactgaagagcttaaggagaagatgtccacacttggtgaaggctct
ctgagaaatttcaccatggacacagagaacagtgtgtacaactttgaaggtgaagattac
cgagagaagaaaaaggtgatcaccaactggattgaaccacctaagagagaacgcaaggca
aactacgctgttgatgcttactttagagaggctctgcgagtcagtgagcccaaagcacca
aaggctcctcggcctcctaagcagcccaatgttcaggatttccagttcttcccccctcgg
ctctttgagctgctggagaaggagattttgtattacagaaaaacgattgggtacaaggta
cctagaaaccctgatctgcccaatgcagcccaggtgcaaaaggaggagcaggccaagatt
gatgaagctgagcctctgaatgaggaagagctggaagaaaaggaaaacctcctttcacag
ggcttcaccatttggaacaagcgggatttcaaccagttcattaaagctaatgagaaatgg
ggaagagacgatattgagaacattgctcgtgaagtagaaggcaaaacaccagaggaagtc
atggaatattccgcggtgttttgggagcgctgcaatgagctgcaggatattgaaaagatc
atggcccagattgagaggggtgaggccaggattcagaggaggatcagcattaagaaagca
ctggactcaaagattggtcgttacaaggcaccattccatcagctaaggatttcttatggg
accaacaaaggcaaaaactacacagaggaggaggaccgcttcctcatctgcatgctgcac
aagctcggctttgacaaagagagcgtttatgatgagctgcgccagtgtatccgcaactcg
ccccagtttcgcttcgactggtttctcaagtcccgtacggcgatggagttacagaggagg
tgtaatacattaatcacccttattgagagggagaacatggagctggaagagaaggagaag
gcagagaagaagaaacgtggtcctcgcacttcatcagcacagaaacgtaaaccggatggc
acctcagatggacgtggtcgtaagaagaagctgaagttgtaa
DBGET
integrated database retrieval system
