Trichomycterus rosablanca: 134314840
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Entry
134314840 CDS
T09921
Symbol
sox5
Name
(RefSeq) transcription factor SOX-5 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
trn03000
]
134314840 (sox5)
Transcription factors [BR:
trn03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
134314840 (sox5)
BRITE hierarchy
SSDB
Ortholog
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GFIT
Motif
Pfam:
HMG_box
HMG_box_2
MutS_III
MPS2
Motif
Other DBs
NCBI-GeneID:
134314840
NCBI-ProteinID:
XP_062851684
LinkDB
All DBs
Position
1:68342601..68435189
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AA seq
752 aa
AA seq
DB search
MLTEPEIPQEFNRMSSKRPASPYGGTDGEVVMATSRQRLDDDEVDRHAVIHLPLSSYCSS
PRAPDSPPTLHSGMDHESSKGLALSPYTQHNSSTSPSKQLQQDEGLGLAMALGTPERRKG
SLADVVDTLKQRKMEELIKSEPEETPNIERLLSKDWKDKLLSMGSGHFGEIKGTPDSLAE
KERQLMGMISQLSSLREQLLAAHEEQKKLAASQIEKQRQQMELAKQQQDQIARQQQQLLQ
QQHKINLLQQQIQQVQGQLPPLMIPIFPPDQRTLAAAAAQQGFLLPPGFNYKPGCNDPYP
LQLIPTTMAAAAAATPGLGPLQLQQLYAAQLAAMQVSPGAKHGSVPQPNLAAGTHSPTSG
LSEKRRSSPPPKLKDEGAQPLNLSAKPKTSESKSPTSPASPQVPAMKLGHGTMKHSVHSN
IGGPPPRISSIDLLSSITSGGYLNDHDAVSKAFQEARQMKEQLKREQQVLDAKVAAVNSL
GLNNGRSEKEKAAFESLSQQMKQSEETKFTQAMMDFGMSGDSDGSPSVSDSRIFREARGR
GSGEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMTNLEKQPYYEEQ
ARLSKQHLEKYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMRNRRQEMRQYFTVGQQSQLS
LSSAGVVYPSALSMAGMPSPQMPSEHSSMSSSPEPAPPTGPPSYLSISKGDEPRIKEEDL
RLDRSNGDAYEDFDYEDEDGDFGSDSENHATQ
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atgctcactgagcctgagatacctcaggagtttaacaggatgtcttccaagcgaccagcc
tctccatatgggggaacagatggagaggtagtcatggcgacgagcagacagcgattggac
gatgacgaggttgacagacatgctgtcattcacctgcccctgagttcctattgcagctca
ccgcgtgccccagacagccctcccacactacacagcggcatggatcatgaaagcagtaaa
ggtctggccctgagtccttacacccagcacaactcttctacctcacccagtaaacagctg
cagcaggacgagggtttgggcttggccatggctttgggcacgccggagaggcgcaaaggc
agcctggcagacgtggtggacacactgaaacagcgtaagatggaggagctgattaagagt
gaacctgaggagacccccaatattgagaggttgctgtcaaaagattggaaggacaagctg
ctgtccatgggttctggtcactttggagagatcaaaggtaccccggacagcctggcggaa
aaggagaggcagctgatgggcatgatcagccagctgagcagcctcagggagcagctgcta
gccgcccacgaggagcagaagaagctggcggcctcgcagattgagaaacagcgacagcag
atggagctcgccaagcagcagcaagaccagattgctcggcaacaacagcagcttctgcag
caacagcacaaaatcaacctcctacagcaacagatccagcaggtccagggtcagctgcca
cctttgatgattcccattttccctccagatcagaggactctggcggcagctgctgcccag
caaggattcctcctgcccccaggattcaactacaagccaggctgcaatgacccataccct
ctccaactgatccccaccaccatggcagctgctgcagctgcaacaccgggccttggacct
ctacagctccagcagctgtacgcagctcagttggcagccatgcaggtgtctccgggggcc
aagcatggctctgtgcctcagcccaacttggcagcgggcacacactcgcctaccagtggc
ctgagcgagaagaggaggagcagcccaccacccaaactcaaggacgagggcgctcagccc
ctgaatctgtcagccaagcctaagacatccgagagcaagtcacccacctcccccgcttcc
ccacaggtccctgccatgaagctgggccatggaaccatgaagcacagcgtccactctaac
atcggaggacctccgccccgaatcagctcaatagacctgttatcatccatcacttcagga
ggctacctgaatgatcacgatgctgtaagcaaagccttccaggaggcacggcaaatgaag
gagcagctaaagagggagcagcaggtcctggacgccaaagtggcagcagtcaacagcctc
ggcctcaacaacgggcgctcggagaaggagaaggcagcctttgagagtctgagtcagcag
atgaagcagtcagaagagaccaaattcactcaggccatgatggactttggcatgagcggc
gactctgatggcagccccagtgtgtcggattcaaggattttccgcgaggctcgaggtcgt
ggcagcggcgaaccgcacatcaagaggcccatgaacgccttcatggtttgggcaaaagac
gaaaggagaaagattctgcaagcttttcctgacatgcataactccaacatcagcaaaatc
ctcggctcacgatggaagtccatgaccaacctagagaagcagccatactacgaagaacag
gcacgcctcagcaagcagcacctggagaaataccccgactacaagtacaagccgcggccc
aaacgcacatgcctggtggacggcaagaagctgcgcatcggtgaatacaaagccatcatg
cgcaaccgcagacaggaaatgcggcagtacttcaccgtggggcagcagtcccagttgtca
ctttcatcagcaggcgtggtctatccaagcgccctctccatggcaggcatgccatcaccc
cagatgccctctgagcactcgagcatgtccagcagccccgaaccagcaccgcccactggc
ccaccctcatacctcagcatcagcaaaggggatgagcctcgcatcaaggaggaggacctc
cggctggacaggagcaatggcgacgcctacgaggactttgactatgaggacgaggacgga
gacttcggcagtgacagtgaaaatcatgccacccagtaa
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