Trichomycterus rosablanca: 134315158
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Entry
134315158 CDS
T09921
Symbol
ercc6
Name
(RefSeq) DNA excision repair protein ERCC-6
KO
K10841
DNA excision repair protein ERCC-6
Organism
trn
Trichomycterus rosablanca
Pathway
trn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
134315158 (ercc6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
trn03036
]
134315158 (ercc6)
03400 DNA repair and recombination proteins [BR:
trn03400
]
134315158 (ercc6)
Chromosome and associated proteins [BR:
trn03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
134315158 (ercc6)
DNA repair and recombination proteins [BR:
trn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
134315158 (ercc6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
TFIIF_beta
SesA
Motif
Other DBs
NCBI-GeneID:
134315158
NCBI-ProteinID:
XP_062852240
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All DBs
Position
5:complement(40851778..40882337)
Genome browser
AA seq
1402 aa
AA seq
DB search
MKIDENRDQDHSALSSPVSILTPGGKEDNGSNWATNGFSIPESSQEEPAAAADPGTIGPE
SSRKSQVLLHINRQEIRAVAQNDQAAELQGLGVDVYDQDVLEQGVLQQVDRAIQEANQAT
AKADAEKEYQSVLDDVRSCTSALKHINKILEQLTPHAASSKDISRKIDSVKRQKENKEKQ
LKKIRAKQRRLQAILDGEDIEKLEAELLTEDDTEAGPSTQGSMLMPAQETEWEELIRTGH
MTPFGTRIPQKQEKKEPRKVMLSENSDFDKYLADQAMMADRRKKPIIKKKEKVSKTSAVK
TSKHSTPSKQEKKLQKRMRKLQRTALKAHPKARPKVEKEFPRTKKKGHGDEGSDSDGSEY
VPSDELMDPEEPERDDEFWMDEDKEYELKPYKKKQMSKTKKSKKEDEDDEYLPGSSDDEE
TEGKKIKKYKDDGDIEYYRKRIRNWKRQRLQEKEQKRQAGEDESEDSDAEFDEGFKMPGF
LWKKLFKYQQTGVRWMWELHCQQAGGILGDEMGLGKTIQVIAFLAGLSYSKLKTRGSNYR
YAGLGPTVIVCPATVMHQWVKEFHTWWPPFRVAVLHDTGSFTNKKERLIPEIVDCHGILI
TSYSYVRIMQDYIQKYDWHYVILDEGHKIRNPNAGVTVACKQFRTPHRFILSGSPMQNNL
KELWSLFDFVFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVQTSYKCACVLRDTINPYL
LRRMKADVKANLSLPDKSEQVLFCRLTEEQRQVYQNFLDSKEVYQILNGDMQVFSGLIAL
RKICNHPDLFSGGPRLLKGLSEEDLTEEEHFGYWKRSGKLIVVESLLRLWFKQGHRVLLF
TQSRQMLEILEVFVRENGYSYFKMDGTTAIASRQPLIAKYNENKDIFIFLLTTKVGGLGI
NLTGANRVIIYDPDWNPSTDTQARERAWRIGQKQQVTVYRLLTAGTIEEKIYHRQIFKQF
LTNRVLKDPKQRRFFKSNDIYELFTLSSPDGSQGTETSAIFAGTGSDVQIPKRPTMPRPS
QSNHSPKPIISKPDKSLSTSLCDGKKKMSNGLPNNIFNTKNDLNSTSPPADGLLTNGHQQ
ELFNAGTPQKHREKKKHCDTTDTASSPSKEHKHKHKKHKHSKDARFEGHRVSHLVKKRPF
KKEESEDQEHSKGERQSDDYVLAKLFKKSGIHSVMKHDTIMEASNPDYVLVEAEANRVAK
DALKALKVSRQRCRLPFARGSTAAAPAPARKRFGQKKNPILNQSSGPKQKPAEKCKDAKF
IKRSGKVKPGSAAHFSGEGVEEESLSTSLSSSSLLARMRMRNHVSLPQGQDEEQDEAEQE
GQPSAPLAPHTEHDELLVDLRNFVAFQAHVDGQASTHEILEYFSSRLTSAQTPVFRELLR
NICNFHRLPGQEGIWKLKPEYR
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatagacgagaaccgggaccaagaccattcagcactgtccagtccagtaagcatc
cttacaccaggaggaaaagaagacaatggatctaactgggcaacaaatggcttctctatc
ccagagagtagtcaggaagaaccagctgcagcagccgatcctggtaccattggacctgaa
agctccaggaaatctcaggtcctgctccatatcaaccgtcaggagatccgagcagtggcc
caaaacgaccaggcagctgaactccaaggtctgggagtggacgtctacgatcaggatgtg
ttggagcagggagttcttcaacaggtggaccgggccatccaggaggccaaccaggctacg
gcaaaggctgatgcagagaaagaataccagtctgtgctggatgatgtcaggtcatgcaca
agcgctctaaaacatatcaacaagatattagagcaactcactcctcatgctgcctccagc
aaggacatcagccggaaaatcgactctgtcaaaaggcaaaaggaaaacaaggagaagcag
ttaaaaaagatccgagcgaagcagaggcgcttacaggccatacttgatggagaagatatc
gagaaactagaggcagagttattgactgaggatgacacagaggcaggcccgtccacgcag
ggcagcatgctcatgcctgctcaagaaacggagtgggaagagctcatccgcacaggccac
atgacaccttttggtacacgcatccctcagaagcaggagaaaaaggagccacgcaaggtg
atgctcagtgagaactctgactttgacaagtaccttgctgaccaggccatgatggcagac
aggaggaagaagccaatcataaagaaaaaggaaaaggtatcgaagacttcagcagtaaag
acctcgaagcacagtacaccctctaagcaggagaaaaaacttcagaaacgtatgcgaaaa
cttcagaggactgctctaaaggctcaccctaaagccaggcctaaagtggagaaagagttt
ccacggaccaagaaaaagggacatggggatgagggttcagacagcgatggctcagagtac
gtgcctagtgatgaacttatggaccctgaggaaccagagcgagatgatgagttctggatg
gatgaagataaagagtatgaactaaagccttataagaaaaaacaaatgagcaaaaccaag
aagtcaaaaaaggaggatgaggatgatgaatacctgcctggaagttcagatgatgaggaa
accgaagggaaaaaaattaagaaatataaggacgatggtgatattgaatactacaggaaa
agaatcaggaattggaagaggcagagacttcaagagaaagagcagaagagacaagcaggg
gaggacgagtcggaagacagtgacgccgagtttgatgaaggatttaagatgccaggcttt
ctctggaagaaacttttcaagtatcagcagacaggtgtcaggtggatgtgggaactgcac
tgccagcaggcaggaggcattctgggagatgagatgggccttggcaagaccatccaagta
atagcctttctggcaggcttgagctacagcaagctgaagacgcgcggctccaattacagg
tatgctggcttgggacccacagtcattgtctgcccagccacagtcatgcatcaatgggta
aaggagttccatacctggtggccgccgtttcgtgttgctgttctccatgatactggttct
tttacaaacaaaaaggagagacttatcccggagattgttgattgccatggtatcctcatc
acatcatattcatatgtgcgcatcatgcaggattacattcagaaatatgactggcattac
gtcatcctagatgagggccacaagatcaggaaccccaatgctggtgtcactgttgcatgc
aagcagtttcggacccctcatcgtttcatcctctccggctcacccatgcagaataacctg
aaagagctgtggtccctttttgactttgtcttccctggtaaattgggcactcttcctgtc
tttatggaacagttctcagtacccataaccatgggagggtattccaatgcctctccagtg
caggtccagacatcgtataagtgtgcctgtgttttgcgtgataccatcaatccatacctg
ctaaggagaatgaaggctgatgtaaaggccaatctctcattgcctgacaaaagcgagcag
gtgctgttttgtagattaactgaagagcagcgccaagtctatcagaactttctggattcc
aaagaagtctatcagattttgaatggagatatgcaggtcttctctggcttaatagcctta
agaaagatctgtaaccatccagacctattcagtggtgggccacgtttgctaaagggctta
tctgaagaggatcttacagaggaggagcattttggctactggaaacgttcgggcaagctt
atagtggtggagtctctactaaggttgtggttcaaacagggacacagagtcttgctcttc
actcaatccagacagatgctggagatccttgaggtgtttgtaagggaaaatggatactcc
tattttaaaatggatggcaccaccgctattgcttccagacagccactcatagccaagtac
aatgagaacaaggatatattcatttttcttctgacgacaaaagtgggaggactaggtatc
aatctgacaggcgcgaacagagtgatcatttacgatccagactggaaccctagcacagac
acacaggcacgtgaacgggcttggagaataggacagaaacagcaagtcactgtttacagg
ctgcttaccgccgggaccattgaagaaaagatttaccacagacaaatcttcaagcagttt
ctcaccaatcgagtactcaaagatccaaagcagcggcggtttttcaagtccaacgacatt
tacgagctttttacacttagcagtcctgatggctctcagggaaccgagaccagtgcaata
tttgcaggcactggttcagatgtacagattccaaagagacccacaatgccacgtccttct
cagtcaaaccattctccaaaaccgataatctcaaagccagacaaatccttatcaacttca
ctgtgtgatggaaaaaagaagatgtcaaatggcctgcccaacaatatcttcaacacgaaa
aatgacttaaattccacatcacccccggctgatggtttattaacaaacggtcaccagcag
gaactttttaatgctggcactcctcagaaacacagagagaaaaagaagcattgtgacaca
acagacacagcaagttctccctcaaaagagcataaacacaagcataaaaaacacaagcat
agcaaagacgctcggtttgagggccatcgtgtgtcccacctagtaaaaaagaggccattt
aagaaagaggagagtgaggatcaggagcacagcaagggagagcggcaaagtgatgactat
gtacttgccaaactcttcaagaagtctgggattcacagtgtgatgaaacatgacaccatc
atggaggcatcaaacccagactatgtcctggtggaggctgaggccaaccgggtagctaaa
gatgcacttaaagctttgaaagtgtccagacaacgatgcagattgcctttcgccagagga
tccacagcagccgcaccagccccagccagaaaacgttttggacagaagaaaaacccaata
ctcaaccaatcatcaggcccaaaacaaaaaccagcagagaagtgcaaggatgctaagttc
atcaaacgatcaggcaaagtaaaacccggatcagctgctcacttcagtggagaaggagtg
gaggaagaatcgctttcgacctccctttcctcgtcctcgctgctggccagaatgaggatg
agaaatcatgttagcctacctcaagggcaagatgaagaacaggacgaagctgagcaagaa
ggacagccctcagctccgcttgctccacacactgaacacgatgagctgcttgtggattta
aggaactttgtggcttttcaggctcacgtggatggccaggccagcactcatgagatcctg
gagtatttctccagcagactgacctcagcgcagactcctgtttttagagaactgctcagg
aacatctgcaactttcacagactccctggccaagagggcatctggaaacttaaacctgag
tacagatga
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integrated database retrieval system
