Trichomycterus rosablanca: 134315260
Help
Entry
134315260 CDS
T09921
Symbol
col17a1b
Name
(RefSeq) collagen alpha-1(XVII) chain isoform X1
KO
K07603
collagen type XVII alpha
Organism
trn
Trichomycterus rosablanca
Pathway
trn04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
134315260 (col17a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
134315260
NCBI-ProteinID:
XP_062852414
LinkDB
All DBs
Position
5:complement(52765101..52800694)
Genome browser
AA seq
1445 aa
AA seq
DB search
MDALKRQTDDLGRNSGERVLTETTVTTSRLTSLPPKGFSGSSSKSMSSSSWGTGGFEKNI
VNPNSGTSYLTSSTVGVTAVGSGFDSALFLGDESTVSSRSRGRRGSSGGYDNVTAKDSGS
KSRSSSGGARKTQGFSSSIGQSPMFERKTIVTSHTGGYDGSSSGNSSPEITRKDYGSSRG
RSHTRESEIRARLQSASPSTRWTELDDVKKLVQSGRSSSVSPTRSTASTTLPVPKKAKVE
AKIIKHDTQPGQYDTSILDSLLPSYTWTSSSLPSNTNSTAFGYQSNTNNMTTGSSLLHTT
SPSSLSVYGFQNNLATPSTAVLTSNAVNTHSGYGVQKNISPGLVSTGVSTGMTARTVNDD
VPRKFIILEKENVPIKKDTEVLILSKDSGKQFSSGTLNGKAGSISDVSLKKEGSGYTEAA
ATKLASSSYYGSSAPTKDKATYAEIQSEKGGGGGGGGGCLGCGPSCCSWWKWLLGLLLGL
LLLLGFLFGLIALAEEVRKLKEKMNVLQSMVHAGGAHSSRQVGNGMFMDMDKFDNSLNLG
ATDTTNLQRTIQSLLDTEIKSEAFKAKLAHSVKGEKGDRGSKGDSGERGAKGENGFPGMP
GSPGVTGPAGHEGSKGQKGSAGEQGAEGVPGLRGRDGPPGLPGIPGSSALKGERGSPGEP
GARGFPGAAGAPGPKGSSGTNGLVGTPGEPGPQGFRGEMGPAGPKGDRGIQGPSGTKGDH
GEKGDPGVPGFPGAPGKTGVSGEKGSKGSTGADGADGDKGQRGDQGAIGMPGVRGPPGPA
GDAGPPGPQGLQGPPGLAGLPGQPGIKGDSGEPGRVINAAGSTSVVIPGPPGPAGPPGSP
GPSGLPGPIGPAGNPGSPGPRGSKGEQGEQGITVERTERQYASSSDSALIQGPPGPPGPP
GPPGTPGYGTPGPRGEKGERGEQGSFVPNSGTFFAGPPGPPGPQGPKGETGPQGPRGYQG
SAGQPGLPGRPGDVRVSETSRAQGSPGLQGPPGPPGPTGPAGPQGIKGDSGIPGAPGIPG
TSRGSGSSVAVAGAPGLPGPPGPPGPPGSSGGSAAEYHRYIAEYMQSDSMRRHLSSIQGP
PGPPGASVSVESVASRVISYIQSSGITGSPGSPGPAGPPGSVTTSDIVALLQREDVRRYV
MGPQGPPGPPGASFDTQEVAKYVLRIIDERGLTGRPGPPGPPGVPGQPGATYSDITALIQ
RSGFAGGVSGPPGPPGRPGPVGPPGPASSGYRLEDIQVYLENSGLRGDPGPPGLPGPQGP
PGDSRTLVSYDGVNQKEYIRTELQNFLNSETMRHYSSGPPGPPGPRGEKGDHGEVDYSSA
ATRVTDYMLNQGLLQQINDEYWKTHSSRFQGPPGPPGAPGYSRVFATHGNITTDLMDFFR
QHGTIPGPPGQQGQKGERGHTGPKGEMGRPGYPGAQGPRGPEGPKGEKGERGEIQRSHRR
RSTEV
NT seq
4338 nt
NT seq
+upstream
nt +downstream
nt
atggacgctttaaaaagacaaacagatgatttaggacggaattctggagaaagagtttta
actgaaacaacagttacaacatccagactcacatcattaccaccaaagggtttcagtgga
tcgagcagtaaaagcatgagcagcagctcttggggaaccggaggcttcgagaagaatatt
gtaaatccaaacagcggaacctcctacctcacatcctctacagtgggtgttactgccgtg
ggctcggggttcgattcggctctgttcctgggagatgaatccaccgtgagcagtaggagc
cgagggaggcgtggcagcagtggcggttacgacaacgtgactgcaaaagactcgggttcg
aagagcagatccagttcagggggggcgagaaagactcaagggttttcctcctctattggt
cagtcacctatgtttgagaggaagacgattgttacgtctcacactggaggttatgatgga
agttcgagtggcaactcatcaccggagatcacgaggaaagattacggttcatcaagaggc
agatctcacacccgagagagtgaaatacgagcccgattacagagtgcgtctccttcaacc
agatggacggagctcgatgacgtgaagaagctggttcagagtggacgctcgtccagcgtc
agtcctacacgttctacagcctccaccactctgcccgtcccaaaaaaagccaaagtcgag
gctaagatcatcaaacacgacacccagcctggccagtacgacaccagtattctggattca
ttacttccatcctacacatggaccagctcctcactgccctccaacaccaacagcacagcg
ttcggctaccagagcaacaccaacaacatgaccacggggtcgagtcttctacacaccacc
tccccctcatcactgtccgtgtacggcttccagaataatctggccacaccatccactgca
gttctcacatcgaatgctgttaacacacattcaggatacggtgtgcagaaaaacatttct
cctggactcgtcagtactggagtatctacaggcatgacagcacgtactgttaatgatgac
gtaccccgaaagttcatcatcctggagaaagagaacgttcctataaagaaggacacggag
gttctcattctgtcgaaggacagcgggaagcagttctccagcggcaccttaaacggaaaa
gcaggatccatttctgacgtttctctgaagaaggagggaagcggctacactgaagcagca
gcgaccaaattagcttcaagttcctactacggatcttcagctccaactaaagataaagcc
acgtatgcagaaatccagtcagagaagggtggtggtggaggaggaggcggcggctgtctc
gggtgtggtcccagttgttgctcctggtggaagtggctcctcgggctgctgctcggcctg
ctgctgctgctcggtttcctgttcggactcatcgctctggcggaggaggtgaggaagctg
aaggagaagatgaatgtacttcagagcatggtccacgccggcggggctcacagcagtcga
caggttggtaatgggatgtttatggacatggacaagttcgataactcactgaaccttgga
gcaacagacacgaccaacctgcagaggactatacagagcctcctggatactgagatcaaa
tctgaggctttcaaagctaaactggctcactcagtaaaaggagaaaaaggagatcgagga
tccaaaggtgattctggagaacgaggagctaaaggagaaaacggttttccagggatgcca
ggttctccaggtgtaactggacctgcaggacatgaaggatcaaagggacagaaaggaagt
gcaggggagcagggggcagagggggtaccaggcctcaggggccgagacgggcctccagga
ctaccaggaataccaggctcatcagcactgaagggtgaaagaggctctccaggagaaccg
ggagctcgaggctttcctggtgctgctggtgctcccggtcccaaaggctcctcgggcact
aacggtttggtaggtacaccaggtgaaccaggtcctcaaggcttcagaggagaaatgggc
cccgcagggcctaaaggagacagagggattcagggtccatcaggaactaaaggtgatcat
ggtgaaaagggcgacccgggtgttccaggtttcccaggggctccaggtaaaactggagtt
tcaggtgagaaaggatccaagggatcaacaggtgctgatggtgctgatggtgataaggga
cagagaggtgaccagggagcaatcggaatgccgggagttcgaggcccacctgggccggct
ggtgatgctgggcctccaggacctcaaggacttcaaggacctccaggcctcgcaggactt
cctggacaacctggtattaaaggcgacagcggtgaacccggccgagttattaatgcagct
ggatccacttctgtggtgatccctggaccaccaggacccgctggtccccctggatctcct
ggaccttccggactgcctggtcctattggtcctgctgggaatcctggatctcctggtccc
agaggtagtaagggtgagcagggtgagcagggcatcacagtggagagaacagagagacag
tacgcttcttccagtgattctgctcttattcagggaccaccaggtccaccgggcccccca
gggcctcctggaactccaggatacggaacccctggccccagaggagaaaagggagagaga
ggagaacaaggaagttttgtgcccaattcaggaacctttttcgctggaccacctggacca
cccggacctcagggtcctaaaggagaaacaggacctcaaggacctagaggatatcaaggg
tcagcaggtcagcctggactaccaggaagaccaggagatgtcagagtgtctgagaccagc
agagctcaaggttctcctgggctacagggacctccagggccaccggggcccacaggacca
gcagggccacaaggcattaagggggacagcggcattccaggcgctcccggcatcccagga
acatccagaggttcaggttcaagtgttgctgttgctggggcccctgggttgccaggtcct
ccagggcctcccggacctcccggttcttcaggtggatctgcagcagagtatcaccgctac
atcgctgagtacatgcaaagtgacagcatgagacggcatctatcaagtatccaggggcct
ccaggtcccccgggggcctcggtgtctgttgagagcgtagcatctcgggtcatcagttac
attcagagttctggtattactggttctcctggttctcctggtcctgctggtcctcctgga
tctgtaaccacgagtgacattgttgctttattacagcgagaggatgttagacgctatgta
atgggacctcagggaccccccggccctccaggagcctcctttgacacacaggaagtggcg
aaatacgttttgagaattattgatgagagggggctgacgggtagacctggaccccctggt
cctcctggtgtacctggccaaccaggagccacctacagtgacatcacagccctgattcag
agatctggatttgctggaggtgtttcaggtcctcctggtccaccaggaagaccaggtcca
gtaggtcctccaggtcctgcaagttcaggttatcgacttgaagacatccaggtttacctg
gagaattcgggattacgaggggatcctggtcctcctggccttccaggacctcaggggcct
ccaggagactcaaggacgctggtttcatatgacggagtcaatcagaaagaatacatccgt
actgagctgcagaacttcctgaacagtgagaccatgagacactactcctcaggtcctcct
ggtcctccaggtcctcgtggtgagaagggtgaccatggtgaggtggactattccagcgct
gccaccagagtcaccgactacatgctgaatcaaggtctgcttcagcaaatcaatgatgaa
tattggaaaacacattcctcgagattccaagggcctcctgggccccctggtgcccccgga
tacagtcgggtttttgctactcatggaaacatcaccactgatcttatggatttcttcaga
caacacgggacgattccgggtcctcccggtcaacagggacagaaaggagagcgaggacac
accggacccaaaggtgaaatgggaaggccaggatatcccggtgctcagggtccaagaggt
ccagaaggtcctaaaggagaaaagggtgagagaggtgagattcagcgcagtcaccgcaga
agaagcaccgaggtgtaa
DBGET
integrated database retrieval system
