KEGG   Trichomycterus rosablanca: 134316184
Entry
134316184         CDS       T09921                                 
Symbol
smx5
Name
(RefSeq) smx5
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
trn  Trichomycterus rosablanca
Pathway
trn03018  RNA degradation
trn03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:trn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    134316184 (smx5)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    134316184 (smx5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:trn03019]
    134316184 (smx5)
   03041 Spliceosome [BR:trn03041]
    134316184 (smx5)
Messenger RNA biogenesis [BR:trn03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     134316184 (smx5)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     134316184 (smx5)
Spliceosome [BR:trn03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    134316184 (smx5)
 Complex C
  U2 snRNP components
    134316184 (smx5)
SSDB
Motif
Pfam: LSM SM-ATX DYW_deaminase
Other DBs
NCBI-GeneID: 134316184
NCBI-ProteinID: XP_062852572
LinkDB
Position
6:1797146..1803168
AA seq 95 aa
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC
FIRGSVVRYVQLPADEVDTQLLQDAARKEAMQQKQ
NT seq 288 nt   +upstreamnt  +downstreamnt
atgctcttctattcgttctttaagtccctggtgggcaaagatgtggtggtagagctgaaa
aatgacctgagtatatgtgggacgctacactctgtagatcagtatctgaacatcaaactc
acagacatcagtgtcaccgaccctgagaaatatccacacatgctgtcagtcaaaaactgc
ttcatccgcggctcggtggtgcggtacgtccagctcccggccgacgaggtggacactcag
cttctacaggacgccgcccgcaaagaggccatgcagcagaaacagtga

DBGET integrated database retrieval system