Trichomycterus rosablanca: 134316671
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Entry
134316671 CDS
T09921
Symbol
prpf38a
Name
(RefSeq) pre-mRNA-splicing factor 38A
KO
K12849
pre-mRNA-splicing factor 38A
Organism
trn
Trichomycterus rosablanca
Pathway
trn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134316671 (prpf38a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
trn03041
]
134316671 (prpf38a)
Spliceosome [BR:
trn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
134316671 (prpf38a)
Complex C
U4/U6.U5 tri-SnRNP related factors
134316671 (prpf38a)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
134316671
NCBI-ProteinID:
XP_062853160
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All DBs
Position
6:48933214..48941592
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AA seq
317 aa
AA seq
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MANRTVKDANSIHGTNPQYLVEKIIRTRIYECKYWKEECFGLTAELVVDKAMELKYIGGV
YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRLLGATYMRLTGTSVDCYKYL
EPLYNDYRKIKSQNRNGEFEVVHVDEFIDELLHAERVCDVILPRLQKRLVLEEAELLDPR
ISALEEDLDEVESSEEEDEEEEKLERPPAPEPHRRYRDLDRPRRSPSPRYRRSPRRRSRS
PKRRSPSPRRERDRERERDRERNRQRSKSPRRHRSRSRERRHRSKSPGHHRSHRHRSHSK
SPESRSKKSHKRESKRK
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacagaacagttaaagatgcgaacagtatacacgggactaacccacaatacctg
gtggagaaaattatacgaaccagaatctacgagtgtaaatactggaaagaagaatgcttc
ggtcttacagccgagcttgtggtggacaaagccatggagctcaagtacatcggaggagtg
tatggaggcaacatcaagcccacacctttcttatgtctgaccctgaagatgctccagatt
cagcctgaaaaagacatcattgtagagttcatcaagaatgaagattttaagtatgtgcgc
ctgcttggagccacgtacatgcgcctgacgggcacttcggtggattgctataagtatttg
gaaccgctgtataacgactacagaaaaatcaaaagtcagaatcgcaatggagagtttgaa
gtggtccatgtggatgaattcatagacgagctgcttcatgcggagcgtgtgtgtgacgtt
attctcccgaggcttcagaagaggctagttctagaggaggctgagctgctggatccacgt
atcagcgccctcgaggaagacctggatgaggtggagtccagtgaagaagaggacgaagag
gaggagaagctggagcggccaccagctccggaaccacacagacgttacagagatttggat
cggcctcgcaggtctccctctcctcgctacagacggtcacccagacggcgaagcagatca
ccgaagagacggagtccgtctcccagacgtgagcgagaccgtgagcgcgagcgcgaccgt
gagcgtaatcgccaacgtagtaagagtccccgcagacaccgcagcagatccagagagaga
aggcatcgatccaaatccccaggtcaccacagaagccacaggcatcgaagccactccaaa
tcaccagaaagtcggtcaaagaagagtcacaaaagggagtcaaagaggaaatga
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