Trichomycterus rosablanca: 134316697
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Entry
134316697 CDS
T09921
Symbol
sned1
Name
(RefSeq) sushi, nidogen and EGF-like domain-containing protein 1
KO
K24470
insulin-responsive sequence DNA-binding protein 1
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
trn04990
]
134316697 (sned1)
Domain-containing proteins not elsewhere classified [BR:
trn04990
]
EGF-like domain-containing proteins
hEGF / cEGF domain-containing proteins
134316697 (sned1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
NIDO
hEGF
EGF_TEN
fn3
EGF_2
Ig_DSCAM-DSCAML_C
EGF_CA
cEGF
EGF_3
EGF_Teneurin
Motif
Other DBs
NCBI-GeneID:
134316697
NCBI-ProteinID:
XP_062853195
LinkDB
All DBs
Position
6:1250042..1294768
Genome browser
AA seq
1477 aa
AA seq
DB search
MAQMPAVTVKHLNISVLFSQFSSASSDGASEAAGSAQNARNLLGTLTEEAPSWRTSVNTE
HKDRHLEPFRNPEKEGIRPHKGGHQTHHKGGHQISKSVNTEHRDRPQEPHRNRPAENLGS
VGVCWRCPPCRVRVMERLWLCALFWIGLPTCVMTAVPLQDFYPFGREHGDLQTMRQDDGG
SGLVEISAAFPFFGDRHMGLYVNNNGLVSFLREVSQFTPVAFPIAGDRRVVAPFWADVDN
RRAGTVLYRESQDPAILTRATEDIHHYFSEFQTFVATWVLIATWHQVTFFGGSSETPVNT
FQVVLITDGEISFTIFQYHNITWTTGMHASSGGDRSGLGGIAAQAGFNAGDGKRYFNIPG
SRTDDVVKVEATTNVGFPGRWVFRIDDAQVQVGSCNDSAAVCPHLRPCLNRGHCIDDCMT
GNPSFTCSCLAGFTGHRCQIDVDECSSSPCQNGGTCTDRVNAFACRCPAGFSGARCETDV
DECQENPCLNGARCIQGSGSYTCECQPGYTGPLCETEINECESTPCLNGGVCEDQVNNYT
CTCTANFTGSHCETELVMVTNSSTANHTDVCEGGSCRQTCKLDDSGNFSCTCRPGYYGDD
CEEECLCQNGGVCVDVNGTCECPTGFTGIYCQFEVTQTPCSNSRPCPDGGPCLEYGGTYL
CTCQTGHDFDHDHKDFYPYVQPRSVCDSSPCQNDGYCYEQDDGYVCECKPGYRGERCEKV
RLSICGSNPCRNGGSCKEEAGGYWCACPYRFTGKHCEVGKPDPCSSSPCMNGGTCFHYIG
KYKCECSGSFMGRHCEISRGSAPALDGKDCGPPPKVKHAEVQFPDTRPGSVALYTCHPGY
APNPRAVPSVCSSQGVWSQTPVCDEINECSSQPCMNGGTCRDRLASFLCECEPRFTGQRC
QTEQDGCESNPCLNGGVCRGYRRTLVCVCKDGYAGNRCQTLENPCVLQPCGNRGVCRSDR
RGNYTCTCRVGHTGRDCEKGLLPPSGLHVLRVEESEVELRWDQSDATQNLISGFAVTYAP
IGRSPRKTDFLERQHSTFVLQGLSPGQLYNISTYSVRRNGNSNDISQPAFALVRTRPRKV
EHLQVMNVSSSQVWLRWVLQTGWQAAVDLVRVSLVPSDGSGARPSVLNASVTNYSFSSLL
PAKMYIVDVLTQSGERPEDLPSTSHSAGPLHFWTRPLPPQNLSLSHVSSTSARVTWGRHP
RSVPDGFVVNVTRGLSTRSRYLPDGTTGTYTIRDLNPGQHYRLALTAVHNTGAEQIHSAA
QHLAFTTAPLEEPRGKPDRPQEGRDTSSRVTVPRPKIQHTGGDTDREHPEEPPRYTELID
GRGRITAKFTNPARKSIRHRTKPEAPVKLERIEETTNRISLALEIPEEATRRKSESQRDC
RTQSCQNGGTCVPSGDSYSCECPAGFKGRQCELYCQRIRHPCTRLYSETKSVPVWEDGVC
HYLYKRTYKVQQDFCFREICEPVLQRKNSSRRTQRQQ
NT seq
4434 nt
NT seq
+upstream
nt +downstream
nt
atggcacaaatgcctgcagttacagtaaaacatctgaatatttctgttctgttcagtcag
ttcagttcagcgagcagcgacggagcgtcagaagctgccggctctgctcagaatgccagg
aatcttctcggcacgctaacagaagaagctccgagctggaggacaagcgtgaacacggaa
cacaaagaccgacacctggaacctttcaggaaccccgaaaaggagggcatcagaccccat
aaaggagggcatcaaacccaccataaaggagggcatcagatctcaaaaagcgtgaacacg
gaacacagagaccgacctcaggaacctcacaggaaccgtccagctgagaatctgggatcc
gttggtgtttgttggcgctgcccaccttgcagggtgagagtgatggagcgactctggttg
tgcgctctgttttggatcggcctgccaacctgcgtgatgactgcggtcccccttcaggac
ttttatccgttcggccgggagcacggggacctgcagaccatgcgccaggacgacggaggg
tccgggctggtggagatctcggcggcgtttcctttcttcggggatcggcacatggggctc
tacgtcaacaacaatggcctggtgtccttcctcagagaggtctcccagttcaccccggtg
gccttcccaatcgcaggagaccggagggtggtggctccattctgggccgacgtggacaac
cggcgagcagggacggtgttgtacagagagagccaagatcctgctattctgactagagct
acagaagatatccaccactacttctcagagttccaaacgttcgtggcgacctgggtcctg
atcgccacttggcatcaggtcacgttctttggcgggagctctgagactccggtgaacacg
ttccaggtggtgctcatcaccgacggtgagatctcctttaccatctttcagtatcacaac
atcacgtggaccacaggaatgcacgccagcagtgggggcgatcgctccggactggggggc
atcgctgcacaggcaggttttaacgccggtgacgggaagcgctatttcaacatacccggt
tctcggaccgatgacgtggtaaaggtggaggccaccacgaacgtgggatttcccggccgc
tgggtatttcgtatcgacgacgcccaggtgcaagtgggcagctgcaacgactcggcggcg
gtgtgcccacatctgagaccgtgtctgaaccgaggccactgcatcgatgactgcatgacc
ggaaacccctcgttcacctgctcgtgcttggcgggcttcaccggccacaggtgccagata
gatgttgacgagtgttcctcgtcgccctgtcagaacggaggcacgtgtacagaccgggtc
aacgcgttcgcttgccggtgcccggcgggattcagcggagctcgctgtgagacggacgtt
gacgagtgccaggagaatccatgcctgaatggtgcgagatgcatccagggttcaggcagc
tacacctgcgagtgccagccgggttacacaggtcctctgtgtgagacagagattaacgag
tgtgagtcgacgccgtgtctgaatggaggtgtttgtgaggaccaggtcaataactacacc
tgtacctgcaccgcaaacttcactggaagccactgtgagacagagctagtgatggtgacc
aactcctctactgctaatcacacagatgtttgtgagggaggaagctgccgacagacctgc
aagctcgacgactccgggaacttcagctgcacctgcagaccaggttactacggagacgac
tgcgaagaagagtgtctgtgtcagaacggaggagtgtgtgtggatgtgaacggaacctgt
gagtgtcccaccggattcaccgggatctactgtcagtttgaagtgacccagacgccgtgc
agtaacagcaggccgtgtccagatggaggtccgtgtttggaatatggtggtacttatctc
tgcacctgccagactggccatgatttcgaccacgaccacaaagatttctacccttatgta
cagccccgatcggtctgcgattcgtcgccgtgtcagaatgacggttactgctacgagcag
gacgacggctacgtctgcgagtgcaagccgggctacagaggggaacgctgtgagaaagtc
agattaagtatctgtggctccaacccctgccgaaatggagggtcctgcaaggaggaggcg
ggggggtattggtgcgcctgtccctacaggttcacggggaagcactgtgaagtgggaaag
ccggacccgtgttcctccagtccgtgtatgaatggtgggacgtgtttccattacatcggc
aagtacaagtgcgagtgctcaggatccttcatggggaggcactgtgagatcagcagaggt
tccgctccggcgcttgacggtaaagactgtggcccccctcctaaagtgaagcacgcagag
gtgcagtttccggacacccgtccgggctccgtggcgctgtacacgtgccacccgggttac
gccccgaatcccagagccgtaccgagcgtgtgcagcagccagggcgtgtggagtcagacg
ccagtctgtgatgaaataaacgagtgctcgtctcagccctgtatgaacggcggaacatgt
cgagaccgcctggcctccttcctgtgcgagtgtgaacccagatttaccggccagcgctgc
cagacagagcaggacggatgcgagtcgaacccgtgtctgaacggaggggtgtgtcgcggc
tacaggaggaccctcgtgtgcgtgtgtaaggacggctacgccggcaaccgctgccaaacg
ctggagaacccgtgtgtactgcagccgtgcgggaaccgaggtgtgtgtcgcagtgacagg
agaggaaactacacctgtacctgcagggtggggcacacaggccgggactgtgagaaaggg
ctcctgcctccatccggtctgcatgtgctgagggtggaggagagcgaggtggagctccgc
tgggatcaaagcgacgccacgcagaacctgatcagcggtttcgccgtcacctacgccccg
atcgggcggagcccgcgcaagacggatttcctggagaggcagcactccaccttcgtcctg
cagggtctgagcccgggtcagctctacaacatctccacctactcggtcagacgcaacggc
aacagcaacgacatcagccagcccgccttcgccctcgtacgcacacggccgcggaaggtg
gagcatctgcaggtgatgaacgtctcctcctctcaggtgtggctacgctgggtgttacag
accggctggcaggccgccgttgacctggtgagggtgtcgctggtgccgtcggacgggagc
ggcgcccgcccttcagtcctcaatgcgagcgtgacgaactatagcttcagctctctcctt
ccggctaagatgtacattgtagacgtgctcacacagagtggagaacgtcctgaagatctg
ccctccaccagccactccgccggaccccttcacttctggacaagaccgctgccccctcag
aacctctccctctcccacgtgagctccacctcggctcgggtgacgtggggtcgacaccct
cgcagcgtccccgacggcttcgtggtgaacgtgacgcgcggcctcagcacccggagtcgc
tacctccccgacggcaccacgggcacctacaccatacgagacctgaaccccgggcagcac
tatcgcctcgccctgaccgccgtgcacaacacgggcgccgagcagatccacagcgccgcc
cagcacctggccttcaccacagcgcccctggaggaaccacgggggaaacccgacagacct
caggagggtcgggacacctccagcagggtcaccgtgccccgccccaaaatacagcacacg
ggcggcgatacagaccgggaacacccagaggaaccgcccagatacacagagctgatcgac
gggcgtgggaggataacggccaaattcaccaacccggcccgtaaaagcattcgccaccgc
acaaaacctgaagctccggttaaattagagagaatagaagaaacaaccaacaggatcagc
ctggctctggagatcccggaggaagcgaccaggaggaaaagtgagtctcagcgtgactgc
aggactcagtcgtgtcagaatggaggaacgtgtgtcccgagtggagactcgtacagctgt
gaatgtccggccggctttaaaggacgacagtgcgagctgtactgtcagcgaatacgacac
ccgtgtacccgcctgtactccgaaaccaagagcgtacccgtgtgggaggatggagtctgt
cattatctatacaaacgaacgtataaggtacagcaggacttttgttttagagagatctgt
gagcctgtgcttcaaaggaaaaactctagtcgcagaactcaaaggcagcagtaa
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