Trichomycterus rosablanca: 134316732 Help Entry 134316732         CDS       T09921                                  Name (RefSeq) 3'-5' exoribonuclease HELZ2-like   KO K25165   3'-5' exoribonuclease HELZ2 [EC:3.1.13.1 5.6.2.6] Organism trn  Trichomycterus rosablanca Brite KEGG Orthology (KO) [BR:trn00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:trn03019]     134316732 Enzymes [BR:trn01000]  3. Hydrolases   3.1  Acting on ester bonds    3.1.13  Exoribonucleases producing 5'-phosphomonoesters     3.1.13.1  exoribonuclease II      134316732  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      134316732 Messenger RNA biogenesis [BR:trn03019]  Eukaryotic type   mRNA degradation factors    3'-5' decay     Other 3'-5' decay factors      134316732 SSDB OrthologParalogGFIT Motif Pfam:  AAA_12 AAA_11 RNB AAA_19 OB_HELZ2 AAA_30 ResIII UvrD_C_2 nSTAND3 PhoH AAA_22 nSTAND_NTPase5 UvrD_C SLFN-g3_helicase UvrD-helicase DEAD AAA_16 OB_Dis3 SRP54 Bac_DnaA Rrp44_CSD1 Motif Other DBs NCBI-GeneID:  134316732 NCBI-ProteinID:  XP_062853232 LinkDB All DBs Position 6:complement(14526430..14547913) Genome browser AA seq 2809 aa AA seqDB search MPRNEDFHKLHILQQTLDLHVCCSQCCERKTEITLSLIELSHQCSRNILLVRQKDKNKQW KLVDPRPEFPVPEKYLVCSHYTEERGCTLHKNKCTYARSKEEAKVWNFMKTEGREHSSLI KLITSSLTSPNEQDDLEEILFRFQGAFVELCETCFRESPQKISTKVSGTCASKHKWRPVL VFRSKDKHKRVVYDEIRPLPKRTFQHWRLCRYVDNGKPCGQESQGCWFAHSEIEMAVWRS ESRKSLDRPSLVHAAQMLQTQEQNQQHYCYVCKCQFLEYEDFMNHCFSVEHRKLIFDDST SKWRYRDPPLTSKALRMCRRLATCEYGSICVRAHSEEELKEWKDRRKAALKKEQAALDQG LLSYQDCLLEEYRESENKEVIMKESLPGVSVSCDSDLRVSVRQENISHQWKFKITSRSAL HVVALLRHERGATFALGENWHEERSYSSGVWFQKSETSNNIVYEITVSFTCDRSGVYEQW LVLDFDMRPVLLQKLNVSVGMVDCGPQSERNQGNKKTQQGTNSSIGKLESKNTQQSEQLP VIWHEGTVEIVPYQMRSDNELFKKYSYTERKEFGTVMIGADLINQQNYKKKMHSFLCQEE MEQAQLVRRLNLRGTMSFKKQLFDDWSGLKISEELFGSIPVSYSLAPDTPEGYMLKRHVQ SVLVDLMRPDCAPQRVYEAVILKDVIGESKLNVNLSRDCCNELQLQSDASAEMEVQFQLD RKWFCEMHKAVDMLPDLRRVLPDLRDRHVQVPVSNKSCPSELNEKQQAAMDFILGASDRK GSVAPLLIYGPFGTGKTLTLAKIALALVQQPQARILICTHTNSSADLYVSDHFHNSALTS DRPVRPLRIKAKESSPRATDDVTLQYCHLSKDHWYFEFPDRETLDAARIIITTTGMARYF HDLQLPSNYFSHIFIDEASQMLECEALMAIGLAGEKTQVILAGDHMQMGPKIFSVGVDKS SDHTLLNRLFHHYQAENTTTAKNSRIIFNENYRSTQEIVDFVSEHFYVGKTDGIKAKGNV PAHPHQNALQFYHVRGECYLDKRSMSCCNPDEIQIVVNLVLKLLSEWPNEWQPKDLASVC VLSQGSQVIEIRNKLKQYNLNAVNVENAENVQGKQYRVIIITTVHTKDSLNITERPCLEF FNDVRLLNTAMTRAQSQVIVVGDATALCCPYFGKCWRLWKSYINHCSETGSAFANEFTLD NLNQELMEISNIIQAKRDDSDDNDSESIISEVSDIDEDPILKELLDEKNDIQIKLTEDGQ FPVLQTDSFENNVVRYNKASTPSGPQPLLVKQNHKTCKLIMDRYDHGFAMPIDEPSLKID IKGKKNVGQSMTGDQVIVEILSSETFPPTGKVIEVVKQENLLREFVCTIDCNDDQVMTPI SICIPKIYTPFWKDKPNHIAIKNPETNGVEKFIKINEEARRNLFVVKLLRWGRHFHHPLG IAVKELPRVTTLEKGLEVLRCEYNLNKTIPESVQREVENLVHTPPSLNHHEDFRKLMTFT IDPSTSEDLDDAISVRDLGEHYEIGVHIADVASFVAKGSELDKFAQQQETTFYVSQANPA HMFPKDLMANIFSLLPGCDRLCISLMTEVDKKTHQIQNRRFFKSVICSKKKLSYEAAEDI LKASGNKRSFDTLEGCLAIACDFAEVHRKDRKQEDWCYQSPDEDEVVGSRRSHRLVEELM IMFNHTVADRFLFDSNTRGLAPLRCQDRPDRDLLQTFQNKHFASLSMSIHLSSKVHGQLS MMQQNQNTENEVSSSDSGHFPILTSVLKNLEIAEQEKDIHRIVDLITTDDLHPQLLPVAL DLRRLIHKAQVLRASSSHLSRIGHYDLQLDCYTWASSPIRRYIDVIVQRLLLSLLDKTDV KYTSHDIDVCCVEFSQKNKDQTVCDTKSHALSLASQLSTQNVQKMAYVVEVNPTGNIFRI SFPLNKNSIRETVGIMYKDLQLADQPLHDQTNDCMKLKWERRVYSFTNLSIHNELKKRQA NSLTTLVPSGHWKSLLASIREENWNLMFELIRQIKTSKDLRTKTQISVTASKTETYHTEG EHYTELSLELKKGEIIKVQLGTDTNRGLMVPAVQLLIVNPKFEICIEHTRNPILCFSKYA LHSTKTSYNTYMDYQKIWKPLCEMESASSAVAENESIVLEDVKLEWKLLHVKDSLQGSFR LPLEKKIQWAIEGNLKNCFICIRLRIHQKDLGTNLKNPSTESPHVDLTSLPGLIWIAHGI VTNVSDEEEFKKKDFMKIQFRINHKPMAEIPQCVFLESARFTLELIQKLLPDVRKEAAID NVREANSLVKAIATGQNRRDKGPKIQTCQLARFEIGNHQFPELNNSQCSAIREALNNDFT LIQGPPGTGKTVVGVHIVYWFFQENQKLSPLDKSVEKGPKKRCILYCGPSNKSVDVVAGQ LLKIEHKLKPLRVYSDQMEILEFPYPGSNLRLSRHSKRVETPNQDLRHITLHHKIRMPDN PFSSQIQAVDSKMQRCQQLSKEEIKNYKECLKMAREYELMKHDVILCTCTAASNPVLADV LIQQIIIDECAMATEPEAFIPLVTHRPKQIVLLGDHKQLQPVVKCELLGRLGMQTSLFER YMTKALMLDTQYRMQKDICEFPSQEFYEGRLKTGTRCRPSVFRIRLHVPTSIIFGHVEGK EESLVVATERGNENSKANLQEANEVVRMAMSLIRAKIKEMDIAILTPYNAQVKKIKDILS EHNIKNITVNTIMKSQGSEWRYVILTTVRSCPKAAIEKEPTKSWLLKKLGFVIDPHQVNV GITRAQEGLCIIGNRDLLQCNKLWRKLLKHYEDKGCVVDPAQNIQIARF NT seq 8430 nt NT seq  +upstreamnt  +downstreamnt atgcctcgaaatgaagatttccacaagttacacattctacaacaaacacttgatttacat gtttgttgtagtcagtgctgtgaacggaagactgagataacactcagtctaattgaactt tctcatcaatgctctagaaacattcttctggtcagacagaaagataaaaacaaacaatgg aaactagtggacccaaggccagaatttccagtaccagaaaagtatctagtttgctcccac tatactgaggaaaggggttgtacattgcataaaaataaatgtacatatgcaagaagcaaa gaagaagctaaagtgtggaactttatgaaaacggaaggtcgtgagcactcaagcctcatc aagctcataaccagtagcttaacatctcctaatgagcaggatgaccttgaagaaattctt tttagatttcagggagcttttgttgaactctgtgaaacctgcttccgcgagagccctcaa aaaatctcaacaaaggtgtcaggcacatgtgcatctaaacataagtggagacctgttctt gtctttcgaagtaaagacaagcacaaaagagtggtttacgatgagatcaggccccttccc aagcgtacatttcaacactggaggttatgtaggtacgtggataatggaaagccatgtggg caggagtctcagggctgctggtttgcccatagtgaaatagagatggccgtgtggaggtca gagagtagaaagagtctagatcgtccaagtttggtccatgctgcccagatgctgcagaca caagagcaaaatcagcagcactactgttatgtttgtaaatgtcagttcctagaatatgaa gactttatgaatcactgctttagcgtggaacacaggaaactgatctttgatgattcaaca tccaaatggagatatcgtgacccaccactaacaagcaaagctctaaggatgtgtcgaaga ttggcgacttgtgaatatggcagcatttgcgtcagagcacacagtgaggaggaacttaag gaatggaaagatcgacgcaaagcagcactaaagaaagaacaggcagccctagatcagggt cttctgtcctaccaggattgtctactagaagaatacagggagagtgaaaacaaagaagta attatgaaggaatctctcccaggtgtatcggttagctgtgactctgatctcagggtttcc gtaagacaggaaaacatatcgcatcaatggaaattcaagataacatcaaggtcagctttg catgtagttgctttgctgagacatgaaagaggagcgacatttgctctgggtgagaactgg catgaagaacgctcatattcaagtggtgtttggtttcagaaatctgaaacatcgaacaac atagtttatgaaattacagtttccttcacctgtgaccgctcaggagtctatgagcaatgg ctagtattggattttgacatgaggccagttctgctgcaaaaacttaatgtcagtgttgga atggttgactgtggtccacaatctgagagaaatcaaggcaacaagaaaactcaacagggt actaattcatctatcgggaagctggaatcaaaaaatacacaacagagtgagcagctgcca gttatctggcatgagggaactgtggaaattgtcccatatcagatgagatcagacaatgaa ctttttaaaaagtacagttacacagagagaaaagagttcggcacagtgatgataggtgct gacctgatcaaccagcagaactacaaaaaaaaaatgcacagctttctctgtcaggaagaa atggaacaagctcagctggttcgcaggcttaatctacgagggaccatgtcttttaaaaaa cagctgtttgatgattggtctggcttgaaaatttcagaagagctgtttggcagcatacct gtctcttattcacttgctcctgatacaccagagggctacatgctaaagagacatgttcag tcagtccttgtggacctgatgagacctgattgtgcaccacagcgtgtttatgaggctgtg attcttaaagatgtcattggggaatctaaactaaatgtaaatctctcaagagactgctgt aatgaactacaacttcagagtgatgcatcagctgagatggaggttcagttccagttggac cgcaaatggttctgtgaaatgcacaaggctgttgatatgctaccagaccttagaagggtt ttgcccgacctaagagacaggcatgttcaggttccagtttcaaacaagtcatgtccaagt gagctgaatgaaaagcagcaagctgctatggactttatccttggcgcttctgaccgcaaa ggcagtgtggcaccattgctgatatatggaccttttggaaccgggaagacacttactctt gctaagattgcactggctcttgtgcagcagccacaagccagaatcttgatctgtacacat actaacagctctgcagatctctatgttagtgaccatttccataatagtgcactaacctct gatcgtccagttagacctttaagaataaaggcaaaggaaagttcaccaagagctactgat gatgtcactcttcaatattgtcatttatccaaggatcattggtactttgagttccctgac agagagacattagatgctgcaagaatcattataacaacaactggaatggcacgatacttc catgacctgcaactaccatcaaactacttcagtcacatattcatcgatgaagcttctcag atgctggagtgtgaggcactaatggctattggcttagcaggggagaagactcaagtaatt ctagctggagatcacatgcagatgggacccaagatcttttccgtgggggtggacaaaagc tcagaccatactttactaaatcgcctctttcatcactatcaagcagagaacacaacaact gctaaaaatagcagaataatcttcaatgaaaactaccgctccactcaagaaattgtggat tttgtgtccgaacatttttatgttggaaagacagatgggatcaaagccaaaggaaacgta cctgcacatccacatcaaaatgctctgcagttctatcatgtcaggggtgaatgctatttg gataaaagatccatgtcttgttgcaatccagatgaaattcaaatagttgttaatctcgtc ttgaaattacttagtgaatggcctaatgagtggcaacctaaagatttagcatcagtgtgt gttctgtcccaggggagtcaggtaattgaaataagaaataaattaaaacagtacaacttg aatgctgtcaatgtggagaatgcagaaaatgttcaaggaaaacagtatagggttatcatc ataactacagtccacaccaaggacagcttgaacataaccgagagaccatgtcttgaattc ttcaatgacgttcgcctgctgaacacagccatgactagagctcagtctcaagtgatagtt gtaggagatgccactgctctgtgctgtccttattttggaaaatgctggagactttggaaa tcttacataaatcactgcagtgaaacaggaagtgcttttgccaatgagttcactttggac aatttaaatcaagaacttatggagatttcaaacattattcaagctaagagagatgacagt gatgacaacgatagtgaatcaatcatatcagaagtatccgatattgatgaggaccccata ctaaaagagctactggatgagaaaaatgacatacagataaaattaacagaagacggacag tttccagttttacagactgacagttttgaaaacaatgtggtgagatataacaaggcaagc acaccttctggacctcaaccactcctagtaaagcagaaccacaagacctgtaaactaata atggacaggtatgaccacggttttgccatgccaattgatgagccaagtttaaagatagac atcaaaggaaaaaaaaatgtgggacagtcaatgactggagatcaggtaattgttgagatt ttgtcctctgagacattcccaccaacaggaaaagtaattgaagtggttaagcaagaaaat ctgctcagagagtttgtttgtacaattgactgcaatgatgatcaagtaatgacaccgata agcatctgtatccctaaaatatacacaccgttttggaaggacaaaccaaaccacattgct ataaaaaatcctgagacaaatggagttgaaaaattcatcaaaattaatgaggaagcccgc aggaacctctttgttgtcaaattgctcaggtgggggaggcatttccatcatcctttgggg atcgctgtaaaggaactcccaagagttaccactttagagaaagggttagaggtactcaga tgtgagtacaatttaaacaagactattccggagtctgttcaaagagaggtggagaatttg gtacatactcctccaagtttaaatcaccatgaagatttccgtaagttgatgacattcaca attgacccttcaacttctgaagaccttgatgatgccatcagtgtgagagatttaggtgag cactatgaaataggagttcatattgctgatgttgcaagctttgtggctaaaggtagtgaa ctggacaaattcgcccaacagcaagaaactaccttctatgtttcacaagctaatccggca catatgttcccaaaagacttgatggccaacattttcagtttacttcctggatgtgatcgg ctttgtatttcattaatgacagaagtagacaaaaagacacatcaaattcaaaacagaagg tttttcaagtctgtaatttgctccaaaaagaaactatcatatgaagctgctgaggacatt ttaaaagcatctggcaacaaacggagctttgacactttggagggctgtcttgccattgct tgcgacttcgccgaggttcacagaaaagacagaaaacaagaagactggtgttaccagtcg cctgatgaagatgaagttgttggaagtagacgatctcacagactggtggaggagttgatg atcatgttcaaccacactgttgcagataggtttctgtttgacagtaacaccagaggcctg gctcctctcagatgccaagacagaccagacagagatctgctacagacttttcaaaacaaa cattttgcctcgctttcaatgtcgattcacctgtcatctaaagtgcatggacagctaagt atgatgcaacaaaaccaaaatactgaaaatgaggtttcaagttctgattctggacatttc cctatattgacatcagtcttgaaaaatctagaaattgcagaacaggagaaagatattcat agaatagttgatcttattacaactgatgaccttcatccacagcttcttcctgttgcactt gaccttaggaggctcattcacaaagcgcaagtcttgcgcgccagttcatctcatctgtca cggatcggccactatgatttacagctggactgctacacctgggcgtcctctccaatccgg cgctatatagatgtcattgtacagcgacttcttctttctctacttgataaaactgacgtt aagtacacgtcacatgacattgatgtgtgctgtgttgaatttagccaaaagaacaaagat caaactgtatgtgacacgaaatcacatgctttgagtctagcgtcacagctgtctacacaa aatgtccaaaagatggcttacgttgttgaggtcaaccccactggaaacatcttcaggata tcatttcctctaaacaaaaactccattcgagaaacggttggcataatgtataaggatctt cagttggcagatcaaccattacatgatcaaacaaatgattgtatgaaacttaagtgggag cgaagggtatactcttttacaaatctcagcatccacaatgaactcaaaaaacgacaagca aactctcttacaacccttgtgcccagtgggcactggaaatccttgctggcatcaatcaga gaagaaaactggaacctcatgtttgaactgataagacaaataaaaacgagtaaagatttg agaaccaaaacacaaatttctgtaacagcctcaaaaacagaaacataccataccgaaggg gaacattacactgagttgtcactggaattgaagaagggtgaaattattaaggtccagtta ggcactgacacaaatcgggggcttatggtgccagcagttcagttgctcattgtaaaccca aaatttgagatctgcattgaacacacaagaaatccaatattgtgtttttcaaaatatgct ctgcactccacaaagacatcatacaatacatacatggattatcagaaaatatggaaacca ctgtgtgaaatggagtcagcctcaagtgccgtggcagaaaatgagagcattgttcttgaa gacgtaaaactggaatggaaactcctccatgttaaggattcccttcagggaagttttcgc ttacctctggagaagaaaattcaatgggccattgagggaaacttgaaaaactgtttcatt tgcattcggttgaggatacatcagaaagatcttggtacaaacctaaaaaacccttctaca gaatctccacatgtggatctcaccagtttacctggtcttatttggatagcccatggaata gttacaaatgtctcagatgaagaagagttcaaaaagaaggactttatgaagattcaattc cgtattaaccacaagcccatggcagaaattccacagtgtgtcttcttggaaagtgctaga tttacattggagctgattcaaaaacttctaccagatgtacgcaaagaagctgccattgac aatgttagagaagctaacagtcttgtaaaagcaattgccactggtcaaaacagacgtgac aaaggacctaaaattcaaacatgtcaacttgccaggtttgaaattgggaaccatcagttt cctgagctaaacaacagtcagtgcagtgctataagggaagcattaaacaatgatttcacg cttatccaaggaccaccagggactggaaaaacagtggttggtgtccacattgtgtattgg ttctttcaagaaaaccaaaagctttctcctctggacaaatctgtggagaaaggcccaaag aagaggtgtattttgtactgtggtccatccaataaatccgttgatgtggttgcaggtcaa cttctaaaaattgaacataaattgaagcctcttagggtttacagtgatcaaatggagatt ctggagtttccctatccaggcagcaatctgagactctctcgtcattctaaaagagtggaa acaccaaaccaagatctcaggcacattacattgcatcataagattcgaatgcctgacaac cccttctcatcacaaatacaagcagttgacagtaaaatgcaaagatgccagcagctctca aaagaagaaataaaaaactacaaggaatgcttaaaaatggctcgtgaatatgagctaatg aagcatgacgtaatcctctgcacctgtactgctgcatcgaatcctgtcttggctgatgtt ctcattcaacagattatcattgatgagtgtgccatggctacggagcctgaagctttcatt cctctagtcacacacagacctaagcagattgttttactgggtgatcacaagcagttgcag cctgtggttaaatgtgaattgttggggagactgggaatgcaaacatcactgtttgaacgt tacatgacaaaagcactaatgcttgatactcagtacagaatgcaaaaagacatctgtgaa tttccttctcaagagttctatgaaggaaggctgaagactggaactagatgcagaccaagt gtttttcggattagattgcatgtaccaacatccatcatctttggccatgttgaaggaaaa gaagaaagtctagtggtcgcaactgaaagaggaaacgaaaactcaaaagcaaacctgcaa gaagccaatgaagtggtgcgaatggcaatgtctctgattagggctaagataaaagaaatg gacattgctatcctaacaccatacaacgcccaggtaaaaaagatcaaagatatcctgtcg gaacacaacataaaaaacatcacagtcaatacaatcatgaagagtcaaggaagtgaatgg cgatacgtcatcttgacaacagttcgctcttgtcctaaggcggcaattgagaaggaacca accaaaagctggcttttaaagaaactggggtttgtaatcgatccccaccaagtaaatgtg ggcatcaccagagcccaagaagggctgtgcattattgggaatcgggacttgcttcagtgc aataaactttggagaaaacttctgaagcattatgaagacaaaggttgtgtggtggatcca gcacagaacatccagattgcacgtttctga

DBGET integrated database retrieval system