Trichomycterus rosablanca: 134316796
Help
Entry
134316796 CDS
T09921
Symbol
usp13
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 13 isoform X1
KO
K11836
ubiquitin carboxyl-terminal hydrolase 5/13 [EC:
3.4.19.12
]
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
trn01002
]
134316796 (usp13)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
trn04121
]
134316796 (usp13)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
trn04147
]
134316796 (usp13)
Enzymes [BR:
trn01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
134316796 (usp13)
Peptidases and inhibitors [BR:
trn01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
134316796 (usp13)
Ubiquitin system [BR:
trn04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
134316796 (usp13)
Exosome [BR:
trn04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
134316796 (usp13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UBA_7
zf-UBP_var
UBA
zf-UBP
UCH_1
UBA_9
UBA_RAD5A
Motif
Other DBs
NCBI-GeneID:
134316796
NCBI-ProteinID:
XP_062853335
LinkDB
All DBs
Position
6:3102137..3153717
Genome browser
AA seq
859 aa
AA seq
DB search
MATDLGELLVPYMPTIRVPRSGDRVYKSECAFSYDSPESEGGLYVCMNTFLGFGREHVER
HYRKTGQSVYMHLKRHVKEKATGAAGGAAPRRRNGKVFLDLELNRDFNGDDYEYEDEAKL
VIFPDHFEIPLPNIEELPALVTIACDAILNAASAYKKQEQDSWEEELQVSKHARSLRQQD
NGVRIPPSGWKCSKCEMRENLWLNLTDGSVLCGKWFFDGSGGNGHALDHYKETNFPLAVK
LDTISPDGADIYSFDEEEAVLDPHIAEHLAHFGIDMLKMQTTENGHHTDNHVQLRATEWE
LIQESGLKLKAVYGSGYTGVRNLGNSCYLSTTMQVLFSIPEFQRAYVGNLQRIFDYSPLD
PTQDFSTQMAKLGHGLLSGQYSKPPIKSELIEQVMKEEYKQQHRGISPRMFKALVSKGHP
EFSSNRQQDAQEFFLHLINQVERNSSGSENPSDVFRFIVEERVQCCQTQKVRYTQRVDYL
MQLPVPFEAATNREELMAYEIKQKDAEEHMRAPPEPVKARVPFTACLQAFTEPENVQDFW
SSALQAKSAGVKTSRFASFPDYMVVQLKKFTFGVDWVPKKLDVSVDMPDFMDLNRLRGTG
LQAGEEELPDLAPPIVIPEDVRDYSVNNSLESPEIDESSVMQLAEMGFPLEACRKAVYYT
GNMGAEMAFNWIIAHMEEPDFAEPLAIPSYMEADMPSASFPTASPVDNQPPEESISILTS
MGFPRHHTIRALKVTNNNLERALDWIFTHPDSEEESEALSDMVDTEPNDSSFSNANTHSD
TTLSPDQEMSSPRVRDGPGRYELFAFISHMGTSTMSGHYVCHIKKEGRWVIYNDHRVCIS
ERPPKDLGYMYFYRRLPSR
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atggccacggatctgggcgagctgctggtaccgtacatgcccaccataagggtaccgaga
tcgggagacagggtttataagagcgagtgcgccttctcctacgattctccggaatcggaa
ggcggactgtatgtgtgtatgaacacatttctgggttttggaagagaacatgtggaacgg
cattaccgcaaaactggacagagtgtgtacatgcacttgaagcgtcacgtcaaagagaaa
gccacaggtgctgctgggggagccgcgccaagacgacggaacggaaaagtatttttagat
ttagagctaaaccgggattttaatggcgatgattatgaatatgaagatgaagccaagctt
gtcatattccccgaccactttgaaatccctttaccaaatattgaggagttgccagccctg
gtgaccattgcgtgtgatgctatactaaatgctgcgtctgcctacaagaagcaagagcag
gattcatgggaagaagagcttcaagtgtccaaacacgccagaagtctcagacaacaagac
aacggggtgcggattcctcccagtggctggaagtgctccaagtgtgaaatgcgagagaac
ctgtggctgaacctgaccgatggatcggtcctgtgtgggaaatggtttttcgacgggagc
ggagggaacggacacgcccttgatcactacaaggaaaccaacttccccctcgccgttaaa
ctggacaccatcagtccagacggagcagacatttattccttcgatgaagaagaagccgtg
ctcgatcctcacatagcagaacacctagcgcattttggaatagatatgctaaagatgcaa
acgacagaaaacgggcaccacacagataaccatgtgcagctccgcgccactgagtgggag
ctgattcaggagtccggactcaagctgaaggcggtttacggttcggggtacacgggcgtc
aggaacctgggcaacagctgctacctcagcaccacaatgcaagtgctcttcagtatccca
gaattccagagggcgtatgttgggaatctacagagaatatttgactattcaccccttgat
cccacccaagacttcagcacacagatggcaaaactgggccatgggcttctctcaggccag
tattccaaaccaccaatcaaatctgagctcattgaacaggtgatgaaagaagaatacaag
cagcagcacagagggatttcccccaggatgtttaaggctctggttagcaagggccacccc
gaattctcctccaacagacaacaggacgcacaagaattcttcctgcatttaatcaaccag
gtcgagaggaacagctctggatctgagaaccccagcgacgtgttccgcttcatcgtagaa
gaacgtgtacagtgctgccagacacagaaagtgcgctacacacagagagtggactatctc
atgcagcttccggtaccatttgaggctgctaccaacagagaggagctgatggcgtatgag
attaagcagaaggatgctgaagagcacatgagggccccaccagagccggtgaaggcccga
gtcccattcactgcctgtcttcaggccttcacagagcccgagaacgttcaggacttctgg
agctcagcgctgcaggccaaatcggccggagtaaagacgtctcgctttgcctcctttcct
gactacatggttgtacagctcaaaaagttcacatttggagtggactgggttccaaaaaag
ttagatgtttctgtagacatgcccgactttatggacctgaatcggctgcgtggtacgggc
ctacaagcaggggaagaggagcttcctgaccttgcacctccgattgtcattcctgaggac
gtgagagactactcagtgaataactctttggaatctccagaaatagacgagtcctccgtg
atgcagctggctgagatgggcttccctctggaggcctgccggaaggccgtgtactacacc
ggcaacatgggagctgagatggcttttaattggatcatcgctcatatggaagagccagac
tttgctgagcctctggcgattccttcatacatggaggcagacatgcccagtgccagtttc
cccactgccagccctgtggataaccagccgcccgaggagagcatttccatcctcacgtcc
atgggcttccccagacatcacaccatccgagccctgaaagtcacaaataataatttggag
cgggcgctggactggatcttcactcaccccgacagcgaggaggagagcgaagccctgtca
gacatggtcgacacagagcccaacgacagcagcttttcaaacgccaacacacacagcgac
accacgctgtccccagaccaggaaatgtccagccctcgtgtacgagatggacctggacgg
tacgaactgttcgccttcatcagtcacatgggaacatcgaccatgtccggtcattacgtg
tgtcatatcaaaaaggagggaagatgggtgatttacaacgaccacagagtgtgtatatca
gaaaggcctccgaaagacttaggctacatgtacttttaccggcgtctgcccagtcgctag
DBGET
integrated database retrieval system
