Trichomycterus rosablanca: 134316974
Help
Entry
134316974 CDS
T09921
Symbol
chd6
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 6
KO
K14436
chromodomain-helicase-DNA-binding protein 6 [EC:5.6.2.-]
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
trn03036
]
134316974 (chd6)
Chromosome and associated proteins [BR:
trn03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
134316974 (chd6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Helicase_C
Chromo
BRK
ResIII
CHDCT2
DEAD
HDA2-3
HTH_CHD1_Hrp3
Chromo_MIT1
MUN
LonC_helical
Motif
Other DBs
NCBI-GeneID:
134316974
NCBI-ProteinID:
XP_062853633
LinkDB
All DBs
Position
6:complement(24071241..24189009)
Genome browser
AA seq
2939 aa
AA seq
DB search
MKIQKKDKQMSATHILKHTPATPATIAPELNAQTTFSIGHFGKEKIRIIDGPPNHCVAHS
KLTGTREMGPGAKSNSPHTSALQVNTEEDDGGGGARVRKKWKKKDKKDTSEWQQLDKERD
IRPKKKKEQKEWKRQPLKKSKSLKEEKGTEKVKEKTVKYGKKVKKEENAPLPQKQRGRKP
KEQGVVPLEKRKKGKRKSDPLQEAAESDDTASLCTLATGGEESTDPMDNTKRRSGRQVKR
RKYNEDLDFKVVDDDGETIAVLGTERAPALLSSTLAWQSEEPPEDEANIIEKILSVRTVK
KETCPGEPPEELEEFYVKYRNFSYLHCKWATLEELEKDPRIHQKIKRFRNKLAQMKHIFT
EPDEDLFNPDYTEVDRILEVAITTDTETGEEVTHYLVKWSSLSYEESTWELQEDVDPVKI
LEFEDLRKFPELKHERPLPEQWQKLEKSREYRNGNQLREYQLEGMNWLLFNWYNRKNCIL
ADEMGLGKTIQSITFLYEIFLMGLRGPFLIIAPLSTITNWEREFRTWTEINVIVYHGSQI
SRQMILQYEMYHRDEQGNVMAGQFKFHGVITTFEMIMADCPELKKINWRCVVIDEAHRLK
NRNCKLLEGLKLMNLEHKVLLTGTPLQNSVEELFSLLNFLEPVQFPSESTFLEEFGDLKT
EEQVKKLQAILKPMMLRRLKDDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLAK
GANQHNMPNLINTMMELRKCCNHPYLITGAEEKILEGFKKTHNPDASDFQLQAMIQAAGK
LVLIDKLLPKLIAGGHKVLVFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDR
FCKVDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKV
YRLITRNSYEREMFDKASLKLGLDKAILQDINRKGGLNGVQQLSKIEVEDLLRKGAYGAL
MDEEDEGSKFCEEDIDQILQRRTQTITIQTEGKGSTFAKASFVSSGNRTDISLDDPNFWQ
KWAKIAELEIDSKEEKQSLVIDTPRVRKQTRHYNSFEDDELMEFSELDSDSEERPCRTRR
LGERSRRYLRAECFRVEKNLLIFGWGRWKDILNHGRFKWHLTERDMEVLCRALLAYCVRH
YKGDDKIKSFIWDLITPTKDGHNQSLQNHTGLSVPVPRGRKGKKLKSQLSSEMKNADWLV
HCNPEVVLQDDSYKKHLKQHCNKVLLRVRMLYYLKAEVLGEAASQALEGVSASKLEVALP
EIDYIEIPIGWWDAEADKSLLIGVHMYGYERYSAMRADPQLCFLERVGMPEVTALTGEQV
GAEVVADTPDSCSVSKTDDIKEVVDEKPEDMENKEEKEKIKVQDTTLPEETVKQNNNLSD
GLVQGLVEQGRALWPAGSALTARLRRLITAYQRYTRREPLRHEFFMHEGIGSIAWQLGED
LRRCATSPDPLFLEWQRRWTRREQADFYRTVSSFGVVYDPEKKTFDWSQFRGLARLERKT
DESLESYFWSFVSMCRTACRLPPRKDEGLVDPALCMEPITEERAARTLYRIELLRKVREQ
VLCHPLLKERLKLCRPSLYLPVWWECGKHDRDLLIGVAKHGLSRTDFYILNDTQLSFLEA
HRNYVQKENYGYSISGLPHQHCCLYDTNLGHCHSPQSSEYHPTPLHPTQIHQDMAVHGHH
EASEVVAVSEPERTLGMGPNSRDSFLDCTPIDDSMELGHLRHDESLHSKSSKEISGFPFN
SASAGHNMLNSYGIQGELNGVQGDMADSIAEKLRSDVLVGEQGSSEETGLMAPSVELDEL
QTQWESSDHAEGSDIFNDADPILGTPTLESGFLDPAQSEDGQEQDDPLTDCLSMPSSDSQ
SNPVEPLAESFMLFKELHAVETPMNQPDLSASAPEYGPPQPLALSDVGIDQAEPISEELE
EKLSGSEVTHCDHNTEDGPNHVKYQFDKDNHSESSLSNLETDEKSRRTQSRNSSMPSVES
LVKNNFKPLKMERNMPVEGLNEDQLKDSCDVSLEEPCDKLLMDPCEVPFEEPHEIPSKEP
LEESLEGSIQNPSEEQLVKRESEESTAEYIEPVVENTPAVPAFQTEGGLPSFLFPALSNT
EVDSSVFQDHKDVKPEPESTTLTPELEQAACLQVKDEIKEEKTKTLDLLGDGFVEAPQIP
TPVCEITDSLHDLREPTIAQLLQEKAHYSFSEWPKDRVIINRIDSICHAILKGKWPSSNQ
QYESPNTVSNVCVRNSAQPRVGLPPARIPLPQNLNFNIPPSLPHIHKERLVTPAFLSELK
HPRCGFEFETEGPPKPSSLREKIQLGIPHHGETLFVNGWQDAAMDLSKATDLAFGRDTGS
MSHESHTVQSGPLKMPSLSSIQGAMGFDMTGILQAGLIHPVTGQIVNGSLCRDESIMRRR
RGRRRNVDVSDLGFFKDRDTNKSKQKGQPESISHPVVSSTSSHPDSSTISPSVLPLTESP
SMSMDSEATSKGLSEWLRQNTSYRIDLPAFQTTAGMLHGFTERPKQRRHRCKDPTKLDVS
SLTGEERVPVVHKGTGRRLGGALAPAIKELSQWLDINSEYFVAPDWADVVKHSGFLPEGK
FTRILTEPVTRDPATRRRGRRPRSEIPKAIELPAGMGPLFMNSGLIGSMDLVSLPNLRNV
PSIPISGLMGFPPGFAPALPGEDAKNGLGILPMMLHSMPAMQSPMYGSHISGMINPASST
ASPTICTSASSSSIATVTSTSSATVALSPSPADSSSNAATKETASPESSTEKQNTEERTQ
REGEKRMFAVAANPSITSSTASITSTGSHLAFNPFLIPGMPHGLLYPHMFLPHGSIMALP
AVPAADSTGSPKRKRKKARDEEGVDGNKVFLEEDDGGRKGLRKKETSECKHKDGRLEEIM
PAVEVGGRDTCGSLAVVDTDKSSEVEKATEESKDGVIKTLEPSMSVPKDKHSDVTQDVL
NT seq
8820 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattcaaaagaaggacaaacagatgtctgccacgcacattttaaagcacactcca
gccactccagccacaattgcccccgagctgaacgcacaaaccactttttcgataggccac
tttggcaaggagaagatacgcatcattgatggaccaccaaatcactgtgtggcacactca
aaactcactgggacaagagaaatgggaccaggggccaaaagcaacagtcctcacacatca
gccttgcaagtcaacacagaggaggatgatggaggaggtggggccagggtgagaaaaaaa
tggaagaaaaaagacaagaaggacacaagtgagtggcagcagttggacaaagagagggac
atcagaccaaagaaaaagaaggaacagaaagagtggaaaaggcagcctctgaagaagtcc
aagtcattaaaggaagaaaaagggacagagaaggtgaaggaaaaaacagtcaaatatggg
aaaaaggtcaaaaaagaagagaatgcacctttaccacaaaagcaacgtgggaggaaacca
aaagagcagggcgttgttcctttagagaagaggaaaaaaggcaaacgaaaaagtgacccc
ttgcaggaggcagcagaaagtgatgacacagcttctctatgcactttggctacaggaggg
gaggaaagcactgaccctatggacaacactaagagacgctcaggtcgccaggtgaagcgc
agaaagtataatgaggacttggattttaaagtagtagatgatgatggtgagaccattgct
gtgttgggaacagagcgagctcctgctctgttgtcatccactcttgcttggcaatctgag
gaacctcctgaagatgaagccaacatcattgaaaagattctctctgtgcggactgtcaag
aaagagacatgtccaggggaaccacctgaagagttagaggagttttatgtgaagtacaga
aatttttcctaccttcattgtaaatgggcaacactagaggagctggaaaaggacccacgc
attcaccaaaaaatcaagcgctttagaaacaagctggcacaaatgaagcacattttcaca
gagccagatgaagacctctttaatcctgactatacggaagtagatcgaattttagaggtt
gcgattactacagatacagaaacaggagaggaggtaacacattacctagtaaagtggtcc
tctctatcatatgaggagagcacttgggaattgcaggaggatgtagatcctgtgaaaatc
cttgagtttgaagacctgagaaaatttccagaactcaaacatgagagacctttaccagag
caatggcagaagctagagaagtcacgtgaatatagaaatggcaaccagcttagagaatac
caactagaaggcatgaactggctcctttttaactggtacaataggaaaaattgcatctta
gctgatgaaatgggtctgggaaaaaccattcagtccataacatttctctatgagatcttc
ctcatgggcttaaggggtccctttcttatcatcgcccctctctccaccattacaaactgg
gagagagagttccggacatggactgaaattaatgtcatcgtgtatcatggcagccagatc
agtcggcagatgatcttgcagtatgagatgtaccacagagatgaacagggaaacgtaatg
gctggccaatttaagtttcatggtgtgatcaccacatttgaaatgatcatggctgattgt
cctgaactgaagaagattaattggcgctgtgtggttattgacgaggctcatcggctaaag
aatcgtaactgtaaacttctggagggactcaaactcatgaacttggaacacaaagtactc
ctaacaggtacacctttacagaactctgtggaggaactcttcagtctgcttaacttcctg
gagccagtgcagttcccctctgagagcacattccttgaggagtttggagatctgaagact
gaggagcaggttaagaagttacaagccattctaaagcctatgatgctgagacggctaaag
gatgatgtggagaaaaatctggcccccaaagaagagaccatcattgaagtggaactcacc
aacatccaaaaaaaatactaccgggccatcttggaaaaaaacttcacctttttggcaaag
ggagccaaccagcacaacatgcccaacctcatcaacactatgatggaactccgcaagtgc
tgcaaccatccatacctcatcacaggggctgaggaaaaaattctagagggctttaagaaa
acccataatcctgatgcgtcagatttccagctccaggctatgattcaagctgcaggaaaa
ctggtgcttattgataagctgttgcccaaactgattgctggaggacataaagtgcttgtg
ttctctcagatggtacggtgcctagatatactagaggactacctcatccagagaaggtac
acatatgaacgtattgatggaagagtcagagggaacctgcgtcaggcagccattgatcga
ttctgcaaggttgactcagatcgctttgtcttcctgctgtgcaccagagccggggggctg
ggcatcaatctcactgctgcagatacctgcatcatattcgattcggactggaacccacag
aatgacttgcaggcacaagctcgctgtcatcggattggtcaaagtaaagcagtgaaggtt
tatcgtctcatcacgcgtaactcgtatgaaagagagatgtttgacaaagccagtctaaaa
cttggactggataaggctattctacaggatatcaaccgcaagggtggtctgaatggggtt
cagcaactgtcaaaaatagaagtggaagatcttttgcggaaaggtgcgtatggtgccctt
atggatgaggaggatgaaggctcaaagttttgcgaagaagatattgatcaaattctgcaa
cgccgtactcaaactatcaccattcagactgagggcaagggatcaacatttgctaaggct
agctttgtgtcttctggaaatcgaacagacatctccttggatgaccctaacttctggcag
aaatgggcaaaaattgcggagctggagatcgactcaaaggaagaaaagcagagtcttgtg
atcgatacacctcgtgtaaggaagcaaacgcggcactacaattctttcgaagatgatgag
ctgatggagttttcggagctcgacagtgactcagaagagcgtccttgtcgcacacgccgc
ctgggggagcgcagtaggcgatatcttcgagcagagtgctttagagtggaaaagaatctg
ctcatatttggttggggacggtggaaggacattctgaatcatggacgttttaaatggcac
ctcacagagagagacatggaagtgctgtgcagagcgttgcttgcctactgtgtccgtcat
tacaaaggtgacgacaagatcaagagcttcatctgggacttgattaccccaaccaaggac
gggcacaaccaatcactgcagaaccacacaggattgtctgtccctgtgcctcgaggacga
aagggtaagaaactgaagagtcagttgagttctgagatgaaaaatgcagactggctggtc
cactgtaacccagaagtagttcttcaggatgacagctataagaaacaccttaaacagcac
tgtaacaaggtactgttaagggtccggatgctgtattaccttaaggcagaggtgctgggg
gaggctgccagccaggctctagaaggagtctcagccagcaaactggaggtagccttgcct
gaaattgactatattgaaatccccattggttggtgggatgcagaggcagataagtctctt
ctcatcggagtgcacatgtatggatatgagcggtacagcgccatgcgagcagatcctcag
ctttgttttttagagcgagtaggaatgccagaggttactgcactcacaggagaacaggtt
ggagctgaggtggtggctgacacccctgatagttgcagtgtaagcaagactgatgatata
aaagaagtagtagatgagaagccagaagacatggagaacaaagaagagaaagagaagata
aaagtgcaggacaccacattaccagaggaaacagtaaaacagaacaataatttatcagat
ggattggttcagggtttagtggagcaggggcgggcactttggccagcaggctctgcactt
acagcaagactacggagacttatcaccgcctaccagcggtacacacgccgcgaaccactc
cgccatgaattctttatgcatgagggcattggatcaattgcctggcaactgggtgaggat
ctacggcgctgcgctaccagtcctgatccacttttccttgagtggcaaaggagatggaca
cgtcgtgaacaggctgatttctaccgcacggtgtcctcgtttggggtagtctatgaccct
gagaagaagacctttgactggagccagtttcgtggccttgctcgtttagaaagaaaaaca
gatgaaagtttagagagctatttctggagttttgtctctatgtgtcgcactgcttgtaga
cttccaccaaggaaagatgaaggtcttgttgaccctgctttgtgtatggagcccattact
gaggaaagagcagctcgtaccttgtaccgtatagagctcctgcgaaaggtccgtgagcag
gtgttgtgtcaccctctgctgaaagaaaggctgaaactttgtcgtccaagtctttatctg
cctgtttggtgggagtgtggcaaacatgatcgtgatcttctcattggtgtggccaaacat
ggtcttagtcgcaccgacttctacatattgaatgacactcaactgtccttcctggaggcc
catcgcaactatgtccagaaagaaaactatgggtactcaatatcaggcctgccccatcaa
cactgctgcctgtacgacaccaatctgggacactgccattctcctcagtcctcagaatac
catcctacacccttgcaccccacacagatacatcaagacatggctgtgcacggacaccat
gaagcctcagaagtggttgcagtatcagaaccagaacgcaccttaggtatgggtccaaat
tctagggatagcttcttggactgcactccaatagatgactctatggagctgggacattta
cggcatgatgaatcactccatagcaagtcaagcaaagagattagtggatttccctttaat
tcagcatcagctggacataatatgttgaattcatatggaatacaaggggaacttaatggg
gtacaaggggacatggctgattctatagctgagaaactgcgtagtgatgttttagtggga
gagcagggatcttcagaagagacaggattaatggccccctcagtggagttagatgaactt
cagacacaatgggaaagttcagatcatgctgaaggctctgatatttttaatgatgcagat
cctatcttggggacacctacacttgaatctggatttctagaccctgctcagtctgaagat
ggacaggaacaggatgatccacttacagattgtttaagcatgcccagttcagactcacaa
agcaacccagtagaaccactagcagaaagctttatgttatttaaagaacttcatgctgta
gagacgcctatgaaccagcccgatttatcagccagtgcaccagaatatggtcccccacaa
cctcttgcactttctgatgtgggcattgaccaagcagagccaataagtgaagaactagaa
gagaagctaagtggttctgaagtcacacattgtgaccataatacagaagatggaccaaat
catgttaagtaccaatttgacaaagacaatcattcagaaagttctctgagtaatttagaa
actgatgagaagtcaaggagaacccaaagcaggaatagtagcatgccttctgtcgaatct
ttagttaaaaataattttaaacccttgaagatggagcgtaacatgccagttgagggttta
aatgaggaccaactaaaggattcttgtgacgtgtctttggaagaaccgtgtgataaactt
ctcatggatccatgcgaagtgccctttgaagaaccccatgaaattccttcgaaagaaccc
ctggaagaatcacttgaagggtcaattcaaaaccccagtgaagaacagttggtcaaacgg
gagtctgaagaatccactgctgaatatatagaaccagttgtagagaatactccagctgtc
cctgcctttcaaacagagggaggtttgccatcttttttgtttccagctctttccaacacg
gaagtagacagctctgtatttcaagaccataaagatgtcaaacccgagcctgaaagcacc
acattgacccctgaactggaacaggctgcttgtcttcaagtaaaggatgaaataaaagaa
gagaaaacaaagactctagatttattgggagatggttttgttgaggcaccacagattcca
acacctgtatgtgagataacagacagtctccatgatctaagggaaccaaccattgctcag
ctgcttcaggagaaggcacattactcattttcagagtggcccaaggacagagtaattatc
aatcgcattgacagtatttgccacgccatcttaaaggggaagtggccttcttccaaccag
cagtatgaatcccctaacacagtgtccaacgtctgcgtacgcaacagcgctcagccgaga
gtcgggttgccgcctgccagaatacctctacctcagaaccttaacttcaacattccaccc
tcattaccacatatacacaaggaacggttggtaactccagcattcctttccgagctcaag
catcccaggtgtgggttcgagtttgagacagagggtcctcccaaaccaagtagtcttaga
gaaaagattcaacttggcattcctcatcatggagaaacactttttgttaatggctggcaa
gatgctgctatggatctgtccaaagctacagaccttgcatttggtagggacacaggctcc
atgagtcacgagtcccatactgtccagtcaggacctcttaagatgcctagcttaagttcc
attcaaggagcaatgggctttgatatgactggcattctgcaagcaggacttatacatcca
gttacagggcagattgttaatggtagtctttgtcgtgatgagtccataatgaggaggagg
agaggtcggaggagaaatgtagatgtctctgacctggggttctttaaggacagagacaca
aacaaatctaaacaaaaggggcaaccagagagtatcagccacccagttgtgtcctctacc
tcttctcatcctgatagctccaccatttccccttctgtcctgcccctcacagagtcacct
agcatgagtatggacagtgaagcaaccagtaaaggcctgtcggaatggcttagacagaac
accagctacagaatagatctccctgctttccaaacgactgcaggcatgctgcatggtttt
acagaacgtccgaagcagaggagacatcgctgtaaagatcctaccaaattagatgtaagc
tctttgacaggagaggagagagttccagtggtgcacaagggtacaggtcgcaggctgggt
ggtgctttggccccagcaataaaggagctttctcagtggctggatataaactcagaatac
tttgtggctcctgattgggcagatgttgttaagcattcaggttttctcccagaaggaaag
tttacacggattcttaccgagccagtgactcgggatccagccacacgccggagaggcagg
aggccgcgtagtgagattcccaaagctattgagctccctgctggcatgggacctctcttt
atgaacagtggacttattggtagcatggacttggttagcttacctaacctgcgaaatgtc
cctagcattcctataagcggcctgatggggtttccacctggttttgctcctgcactacct
ggagaagatgctaaaaatggcctgggtattcttcccatgatgctccatagcatgccagcc
atgcaatcacccatgtatggatctcatataagtgggatgataaacccagcatcatctaca
gcatcccctacaatatgtacatctgccagctcctccagcatagcaacagtcacttccaca
tcctccgccactgtggccttatccccgagcccagctgacagctccagcaatgcggctacc
aaagagacagccagccccgagtctagtaccgagaaacaaaatacagaggagagaacgcaa
agggagggggagaaaagaatgttcgctgttgctgccaacccatcaattactagcagtact
gctagcattacaagcactgggagccatttggccttcaacccatttttgatccctggcatg
cctcatggactgctgtacccacatatgttcctaccgcatggcagtataatggcacttcca
gcggtgccggcagcagatagcactggaagtccaaagaggaagagaaagaaagctagggat
gaagaaggggtggatggaaacaaagtctttttagaggaagatgatggagggagaaagggg
ttgagaaagaaagagacatcagaatgcaagcataaagatggcagattagaagaaatcatg
ccagcagtggaggttggtggtcgtgacacctgtggctctttagctgtggttgatactgac
aagagcagtgaggttgagaaagcaacagaggaaagtaaggatggagtaataaaaacattg
gagcccagcatgtctgtgccaaaagacaaacactcagacgttacacaggatgtgttatag
DBGET
integrated database retrieval system
