Trichomycterus rosablanca: 134317080
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Entry
134317080 CDS
T09921
Symbol
vps16
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog isoform X1
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
trn
Trichomycterus rosablanca
Pathway
trn04140
Autophagy - animal
trn04148
Efferocytosis
trn05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
134317080 (vps16)
04148 Efferocytosis
134317080 (vps16)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
134317080 (vps16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
trn04131
]
134317080 (vps16)
Membrane trafficking [BR:
trn04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
134317080 (vps16)
Hops complex
134317080 (vps16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
DUF740
CNOT1_HEAT
Motif
Other DBs
NCBI-GeneID:
134317080
NCBI-ProteinID:
XP_062853838
LinkDB
All DBs
Position
6:complement(35356105..35376083)
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AA seq
835 aa
AA seq
DB search
MAFVTANWNPLGGAFYRKTELYQMDWNLKDGFKDCLIAAAPYGGPIALLKEPQRHSPSAR
PQLEIYSSSGAPMASFVWKSGVVKQLGWTVSDDLLCIQEDGTVLVYDLFGSFKRHFSMGN
EVGQSQVLEAKVFHSPYGTGVAIVTGASRFTLATNIDDLKLRRLPEVPGLQDAPSCWAVL
TQDRQSKVLVANGPDLFILDYGICTAVTPPGLSPQASSIVHMCVSFSYKYLALFTDSGHV
WMGSTNLREKLSEVETKFRNPPRQMAWCRRPKSQQPSVVIMWNRCLLVAGVCKDTISYHL
DDDSILVPELDGVRIINATNHELLQEVPVACEEIFKIASMAPGALLLEAHKEYEKESQKA
DEYLREIKERDQLVEAVKQCIEAAGHEHDPDTQKTLLRAASFGKCFLSNFPPELFVIMCR
DLRVLNAVRDYTVGIPLTHTQFKQMTVQVLIDRLVYRKLYPLAIEICRYLKTPEYQGVSR
VLKHWACCKVQQKEEADDIIAKAISLKLGDAAGISYSEIANKAYECGRTELAIKLLEYEP
RSGEQVPLLLRMKRSQLALSKAIESGDTDLVYTVVTYLKNEMNRGDFFMTLRNQPVALSL
YRQFCKHQEQDTLKDLFNQDDDHQELGNYYVKASYQEKRLEARISLLQSAVDEYNKAKNE
FAAKATEEEMRLVRFQRKLEEEKGECLLGFSLHDTISTLLSVGLHKHAEQIYKDFRVPDK
RYWWLKLTALAEKQDWEELEKFAKSKKSPIGYMPFVEVCVKRNNKFEAKKYVSRVTPEQK
VKAHLAVGDLEGAADAAIERRNEEDISKVLSRCSPTTDRLVVERLNRARATGAKK
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atggcttttgtaacggctaactggaatcctcttgggggggctttttacaggaagactgaa
ctgtatcagatggactggaaccttaaggatggttttaaagattgtttaatagctgcagct
ccatatggtggtcccatcgctctgttgaaggagccacagcgccactctcccagtgcacgc
ccccagttagagatttactcctcttctggagcacctatggccagttttgtgtggaaaagt
ggtgtggtaaagcaactgggctggactgtatctgatgatttgctatgtattcaggaagat
gggactgttctagtctatgacctatttggcagctttaagaggcactttagcatgggaaac
gaggtgggacagagccaggttttggaggccaaggtctttcattctccatatggaactgga
gttgctatagtaacaggagcatcacgttttacgctggcaacaaacatagatgatctgaaa
ctcagaaggttaccagaggtaccaggtctgcaagatgcaccatcttgctgggcagtgctt
acccaggacagacagagcaaagtactagtggctaatggtcctgatctttttattctggac
tatggtatctgcactgctgtgacccctccaggactttctcctcaagcttccagtatagta
cacatgtgtgtgtcttttagctataagtacctagccctgtttactgattccggccatgta
tggatgggctccaccaacctgagggaaaagcttagtgaagtggagacaaaattcagaaat
ccacccagacagatggcctggtgtcgcaggcctaagagtcagcagccatcagtggtgatc
atgtggaatcgttgtcttttggtagcaggagtgtgtaaagataccatttcgtatcacctt
gatgacgactcaattcttgtgcccgagctggacggggttagaatcatcaatgccacaaat
catgaactgttgcaggaggtgccagttgcctgtgaggagatttttaagatcgcctccatg
gctccaggagcgctgctgctcgaagcacacaaagaatacgagaaagaaagccagaaggcg
gatgagtatctacgggagattaaagagcgggatcagttggtggaggcagtaaagcagtgt
atagaggcagcaggacatgagcatgacccagacactcaaaaaactcttcttagggcggcc
tctttcgggaagtgcttcctgagtaattttcctcctgagctgtttgtcattatgtgcaga
gacctgcgagttttaaatgcagtgagagattatactgtgggcatccctctcacacacact
cagttcaaacagatgacagttcaagtgctcattgaccgactggtgtatcgaaagctgtat
cctctggctattgagatctgtcgctatttgaagactcccgagtaccagggagtgagtcgg
gtcctcaaacactgggcctgctgcaaggtgcaacagaaagaggaggctgatgacattatt
gcaaaggccataagcctaaaactgggtgatgctgcaggaatctcctattccgagattgca
aataaagcctatgaatgtggacgcacagaacttgctattaagttgctggagtatgagcct
cgttctggtgagcaggttcctctgctgctgaggatgaagaggagccagctagcactcagc
aaagctatagagagtggagacacagaccttgtgtacacagtggtaacatacctaaagaat
gagatgaacaggggagatttcttcatgactttgagaaaccagccagtggctctcagcctc
tatagacagttctgtaaacatcaagaacaagacacactgaaagatctcttcaatcaagat
gatgatcaccaagagcttggcaattactacgtaaaagctagttaccaagaaaagagactg
gaggctcgaatctctctactgcaaagtgcagtggatgagtacaacaaggccaagaatgaa
tttgcagccaaggcaacagaggaggagatgcgtctggtacgtttccaaagaaagctggag
gaagaaaagggcgagtgtctgctgggtttctctctacatgacactataagcacactgctt
tctgtgggtctgcataaacacgcagagcagatttacaaggactttagagtaccggacaaa
aggtactggtggttaaagctgactgctctggctgaaaaacaggactgggaagagcttgag
aagtttgctaaaagcaagaaatcaccaattggctatatgccatttgttgaggtttgtgta
aaacgaaacaacaaattcgaggccaagaaatatgtgtctagggttacaccagagcagaag
gtcaaagcccatctggcagtaggtgatttggaaggtgcagcagatgcagcaatcgaaaga
aggaatgaagaagacattagtaaggttttgtcccgctgttctcccacaacagaccgcttg
gtggtagaacgtcttaaccgtgcccgggccactggtgccaaaaagtga
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