Trichomycterus rosablanca: 134317123
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Entry
134317123 CDS
T09921
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
trn
Trichomycterus rosablanca
Pathway
trn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134317123
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
trn03041
]
134317123
03009 Ribosome biogenesis [BR:
trn03009
]
134317123
Enzymes [BR:
trn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
134317123
Spliceosome [BR:
trn03041
]
Complex A
U1 snRNP components
U1 related factors
134317123
Complex B
134317123
Ribosome biogenesis [BR:
trn03009
]
Eukaryotic type
Pre-60S particles
Helicases
134317123
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
134317123
NCBI-ProteinID:
XP_062853899
LinkDB
All DBs
Position
6:40091119..40099222
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AA seq
620 aa
AA seq
DB search
MPGYSDRDRGRDRGYGGGAPRFGGGRNGPPSSKFGNPGDRLRKRHWNLDELPKFEKNFYK
EHPDVTRRSIQEVEQYRRAKEVTVKGRDCPKPIIKFHEATFPNYVMEVINKQPWSEPTPI
QAQGWPLALSGKDMVGIAQTGSGKTLAYLLPAIVHINHQPFLEHGDGPICLVLAPTRELA
QQVQQVAAEYGRASRLKSTCIYGGAPKGPQMRDLERGVEICIATPGRLIDFLEAGKTNLQ
RCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVQI
NIGALQLSANHNILQIVDVCNDGEKDDKLIRLLEEIMSEKENKTIIFVETKRRCDELTRR
MRRDGWPAMGIHGDKSQQERDWVLNEFKFGKACILIATDVASRGLDVEDVKFVINYDYPN
SSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQANDLISVLREANQAINPKLIQMAEDRGG
RSRGGRGNYKDDRRDRYSGGGRRDYGSYRDRDSERGYSSGPKSQNGSYSGGGSYNKSNSG
SGNYNSGGSNYNNNSYNSGGNPNQNPNQSTFGNQNFQNQSFQGNHPPAQNGMNHPPFPFN
PPQQPPQSMVPYSMPPPFPQ
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatattcagacagagatcgtggaagagacaggggttatgggggcggtgcacct
cggttcggtggaggccgaaatggccctccgtctagcaaatttggcaaccctggcgacagg
ctgcgcaaaagacactggaacctcgatgaactccccaaatttgaaaagaacttctacaag
gaacaccctgatgttacccgcagatcaatacaagaggtagaacagtacagaagagcaaaa
gaagttacagtgaaaggcagagattgccctaaacctatcataaagttccatgaagccaca
ttccccaattatgtaatggaagtgatcaacaagcaaccatggtctgagcccactccgatt
caagctcaaggctggccgctcgcacttagtgggaaggacatggttggcattgcccaaacc
ggctctggaaaaaccctggcatacctgttgccagcaattgtgcatattaaccatcagcca
ttccttgaacatggagatggtcctatttgtttggtgctggcacctactcgtgagctggcc
cagcaggttcagcaggtcgccgcagagtacggaagagcctcccgcctaaagtccacctgc
atctatggaggagctcccaaaggaccccaaatgagggaccttgagagaggggttgagatc
tgcattgccactccgggtcgtctgattgacttcttggaggcaggaaaaaccaacctgcag
cgctgcacttacctggtgctagacgaggctgaccgcatgctggacatgggctttgagcca
cagatccgcaaaatcgttgatcagattcgtcctgacagacaaactctgatgtggagcgcc
acttggcccaaagaggtacgtcagttggcagaggatttcctgaaggagtacgttcagatt
aacataggagctctgcagcttagcgcaaaccacaacatcctacagatcgtggatgtctgt
aatgatggggaaaaggatgacaagctgatccgtttgctggaggaaatcatgagcgagaag
gagaataagaccattatctttgttgagaccaagaggaggtgtgatgagctaacccggagg
atgaggagagatgggtggcctgcaatgggaattcatggagacaaaagtcagcaagaaaga
gactgggttctgaacgaattcaagtttggtaaagcatgcatcctcatcgctacggatgtg
gcctcacgtggactagatgtggaggatgtgaaatttgtcatcaattatgactaccctaac
tcctctgaggactatatccatcgaatcgggcgcacggcccgcagtcagaaaactggcacg
gcctacaccttctttacgcccaacaacatgaagcaggccaatgacctgatctcggtcctg
cgcgaggccaatcaggcaatcaatcctaaactgattcagatggcagaggaccgaggaggt
cgttccagaggtggtcggggaaactacaaggatgaccggcgggaccgctattccggtggg
ggtaggagagattatggtagctatagggatagagatagtgagaggggttacagtagtgga
ccaaagtcacaaaacggcagttacagtggtggcggcagctacaacaaaagtaacagtggc
agcggtaattacaatagtggcggcagcaactacaataataacagttacaacagtggggga
aacccgaaccaaaacccaaaccaaagcactttcgggaaccagaactttcagaaccagtcg
tttcagggaaatcatcctccggcccagaatggaatgaaccacccgcctttcccatttaac
ccccctcaacagccccctcagtcgatggtgccgtactccatgccccctccttttccccag
tag
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