Trichomycterus rosablanca: 134317192
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Entry
134317192 CDS
T09921
Symbol
smarcc2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
trn
Trichomycterus rosablanca
Pathway
trn03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
134317192 (smarcc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
trn03021
]
134317192 (smarcc2)
03036 Chromosome and associated proteins [BR:
trn03036
]
134317192 (smarcc2)
Transcription machinery [BR:
trn03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
134317192 (smarcc2)
Chromosome and associated proteins [BR:
trn03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
134317192 (smarcc2)
PBAF complex
134317192 (smarcc2)
GBAF(ncBAF) complex
134317192 (smarcc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
134317192
NCBI-ProteinID:
XP_062854008
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All DBs
Position
6:complement(43573606..43595409)
Genome browser
AA seq
1035 aa
AA seq
DB search
MAVRKKDGGPNVKYFEASDTVSQFDNVRVWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGRHVSNPPLTKLPMKTFLDFKAGGALCHILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSLVQNNCLARPVIYLSSEIEPKLLGKLKDIVKRHQGSVTDDKQSSTHVVVP
IPASLEEEEWVRPVMKRDKQMLLHWGYWPDSYDTWIPSSEVEAVVEDPPTPEKPRKVHAK
WILDLDQYNEWMNEEDYEIVEEGTRRKKISAKTLTDEVTAPDERRDKKPANTKKRKRSPS
PSPTPPPQESKKKNTKKGPTTPYTKSKRGQREEEPEDLTKDVDEPSPVPAPDESSLNKTV
TKKDSEATPVKGGTEGDEQEDEAMETVGKEEEEGSPSVKGEPVKNTDLHEDNVTEQTHHI
IIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTST
ACRRNLAGDVCAIMRVHAFLEQWGLINYQVDSESRPTPMGPPPTSHFHVLADTPSSLVPL
QPKASQTPSSQQMMPFSDKVKDKPTDLQNFGLRTDMYSKKSGTGTAKVKNAASATREWTE
QETLLLLEGLEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENGSSSLGPFAYQP
VPFSQAGNPVMSTVAFLASVVDPRVASAAAKSALEEFSRMKEEVPAALVEAHVRRVEEAA
RVSGRPDPLYGLEGSGIAGTGLEDSDKPAEENNEESKSSDGQSSEDKRENKESKDVASEE
EEKQSENGKKEEERTREGETEREAEKTDSEMGDGEKEKDGKEGSDESLREGESDGERKAK
VERDVGEGNLATAAASALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLKHFEE
LETIMDREREALEYQRQQLLADRQSFHMEQLKYAEMRARQQHFQQIQHQHHSNQPGNQSS
SAPPVLHPSAPNANVPTSTPSVAQAASANTPNEAPPSSTSHTSPPSNTQTGAVHDSSTPL
AGDSLHPSAPVPPAQ
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggcggtacggaagaaagacggcgggccgaatgtaaaatattttgaagcgtctgatacc
gtctcgcagttcgacaatgtacgagtttggctgggaaagaattacaaaaagtatattcaa
gccgagccgcccaccaataagtctttgtccagtctggttgttcagctactgcagtttcag
gaggaagtttttggacgacatgtcagcaaccctcctctcaccaagctgccgatgaagact
tttttggattttaaggctggtggagctttgtgtcatattctcgctgctgcttataagttt
aagagtgaccaaggatggaggaggtttgattttcaaaacccatccagaatggaccgtaac
gttgaaatgtttatgaccatagaaaagtctttggtacagaataattgtctggctcggcct
gtaatctacctgagctcggagattgagcccaagctgctggggaaactgaaggacattgtt
aaacgacaccagggatcagtaacagatgataaacaatccagtactcatgtggtggtgccc
attcctgccagtttggaggaggaggaatgggtccgtccagtcatgaaaagggataaacag
atgctgctgcactggggttattggcctgacagttatgacacgtggatcccatccagtgaa
gtggaggcagtagtggaagatccacccactccagagaaacccagaaaggttcacgctaag
tggattctggatttggaccagtataatgagtggatgaatgaggaagactatgagattgtg
gaggaaggcacgagaagaaagaagatttcagccaagactctgacagatgaagtgaccgct
ccagatgaaaggagagataaaaaacctgctaacaccaagaaaaggaagcgttcgccctct
ccatcccctactcctcctccacaggagagcaagaagaaaaacaccaagaaagggccaact
acaccctacactaagtctaagcggggacagagagaggaggaaccagaggatctaactaaa
gatgtggacgagccatcacctgtgcctgcaccagacgagtcttcactaaataaaacagtg
accaagaaagactcagaagcaaccccagtgaaaggagggactgaaggtgacgagcaggag
gatgaggctatggagactgtgggaaaggaggaagaggagggttcccctagtgtaaagggt
gagccggtaaaaaatactgacctgcatgaggataatgtgacggagcagactcaccatatt
attattcccagctatgctgcctggtttgactacaacagtgttcatgctatagagcgtaga
gctcttcctgagttctttaacggaaaaaacaaatcgaagacccctgagatttatctggca
taccggaacttcatgattgacacataccgactaaacccacaggagtatttgacgtctaca
gcttgccgtagaaacctggcaggagatgtgtgtgcaatcatgagggtccatgcatttctg
gaacaatggggtttaatcaattatcaagtggattcagagagccgaccgactcccatgggt
ccgccgcccacatctcactttcacgttttggcagacacaccatccagccttgtgccactg
cagcctaaagcttctcagaccccatcctcgcaacagatgatgccttttagcgacaaagtc
aaagacaagcctacagatctgcagaactttgggctgaggacagacatgtacagcaagaaa
agtggtacaggtacagccaaggttaaaaatgcagccagtgctacacgggaatggactgaa
caggagacgctgctgctgctggagggtttggagatgtacaaagatgactggaacaaagta
tctgagcatgtgggcagtcgcacacaggacgagtgcattcttcacttcctaagactgcca
atcgaagacccgtatctggagaatggttcctcatctcttggtccatttgcttatcagcca
gtgccatttagtcaggcaggaaacccagtcatgagtacggtggcttttctggcctcagtg
gttgacccacgagtcgcctctgctgctgccaagtctgctctggaggagttctctcgtatg
aaggaagaggtgccggcagctttggtcgaggctcatgtgcggagggtggaggaggcagcc
agggtgagcggaagaccggatccactgtacggcctcgagggtagtggcattgctggaact
ggtctggaggactctgacaagcctgcggaggagaacaatgaagaaagcaagagcagtgat
ggacagtccagtgaggacaagagagaaaacaaggagagtaaagatgtagcaagtgaggag
gaggagaagcaaagtgagaatggaaagaaggaagaagaacgaacgagagaaggagagacc
gaaagagaggcagagaagacagattcagagatgggcgatggtgagaaggagaaagacgga
aaggagggatcagatgagagtctgagggaaggagaaagtgatggagagagaaaagctaaa
gtggaacgggatgtcggggagggaaatctagccactgcagccgcctctgctcttgctgct
gctgccgttaaggccaagcacttggctgcggtggaggagagaaagatcaagtctctggtg
gccctgctggttgagactcagatgaaaaagctggagatcaaattgaaacacttcgaggag
ctggagaccatcatggatcgagaaagagaggcgctggagtaccagagacagcagctcctt
gccgatcgtcagtccttccacatggagcagctgaagtacgctgagatgagagcccgccag
cagcacttccagcagatccaacaccagcaccacagcaaccaacctggcaaccagtcaagc
agcgctcctcctgtacttcacccatcagctcctaatgctaacgtcccgacttctacaccc
agcgtcgcccaggcagcctctgccaacacccctaatgaagctccaccctcgtccacctct
catacctctccacccagcaacacacagactggagcagtgcacgactccagcactccacta
gcaggggattccctccatcccagtgccccagtgccccctgcacagtaa
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