Trichomycterus rosablanca: 134317197
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Entry
134317197 CDS
T09921
Symbol
scn8ab
Name
(RefSeq) sodium channel, voltage gated, type VIII, alpha subunit b
KO
K04840
voltage-gated sodium channel type VIII alpha
Organism
trn
Trichomycterus rosablanca
Pathway
trn04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
134317197 (scn8ab)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
trn04040
]
134317197 (scn8ab)
Ion channels [BR:
trn04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
134317197 (scn8ab)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
ATP-synt_B
IQ
GPHH
SieB
Motif
Other DBs
NCBI-GeneID:
134317197
NCBI-ProteinID:
XP_062854019
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All DBs
Position
6:43860347..43945078
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AA seq
1967 aa
AA seq
DB search
MAAPLLAPPGPDSFKKFTRESLANIETRIAEEKKKKPVKPRSDSSHRDDDEDSGPKPNSD
LEAGKSVPFIYGDAPSKMVAVPLEDLDPFYLNKKTFIVLNKGKTIFRFSATPSLYIISPF
SLFRRIAIKILIHSVFSMIIMCTILTNCVFMTFSNPPEWSKQVEYMFTGIYTFESLTKIV
ARGFCIDGFTFLRDPWNWLDFMVISMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLK
TIVGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCVIWPISNETVTYLANGS
KGFDFSEYIMNDTNFYFLPGMLDALLCGNSSDSGRCPEGYTCMKAGRNPNYGYTSFDSFG
WAFLALFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFVGSFYLVNLILAVVAMAYEEQ
NQATIEEAQRKEDEFKAMLEQLKKQQEEAQAQAMATSAGTVSEDAVEGDGGGHLSRSSSE
VSKLSSKSAKERRNRKKKWKKEQEKEKGDTEKAVKSESDDASKRSRFRFPDNRLGRKASI
MNQSLLSIPGSPFMSRHNSRSSIFSFKGRTRDVGSENEFADDEHSTVEESEDRRGSLFIP
YRRNSYSGYSQGSMRINPLAPHSGCKKNSTVDCNGVVSLIGPGHGRLLPEATEVDMKRKH
SGSLMVSVDQLNTSFGRKERANSVMTVITNTLVEELEESQRKCPPWWYKFANVFLIWECC
PLWLKIKEIVNLIVMDPFVDLAITICIVLNTVFMAMEHYPMTEQFEHVLSVGNLVFTGIF
TTEMVAKLVAMDPYYYFQEGWNIFDGFIVSLSLVELMLADVEGLSVLRSFRLLRVFKLAK
SWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKDCVCKIAESCELPR
WHMNDFFHSFLIVFRVLCGEWIETMWDCMEVADQTMCLTVFMMVMVIGNLVVLNLFLALL
LSSFSADNLAATDDDGEMNNLQISAIRIKKGIAWAKVHARLLMAQVLKKSPLEDDDKPLD
DMYEKKLNLIGNHTGVDIKCELDFAKNGNGTTSGIGSSVGKYIIDEERMSFIHNPNLTVR
VPIAVGESDFENLNTEDFSSESDVENSKDLDDTSSSEGSTIDIKPEEEEVAVEVVEEYLD
PEACWTDACVARYKCCDVSITEGWGKHWWYLRKTCYLIVEHNWFETLIIFMILLSSGALA
FEDVYIEQRKTIQIILEYADRVFTYIFILEMLLKWVAYGFVKYFTNAWCWLDFFIVDVSI
VSLIANALGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLI
FWLIFSIMGVNMFAGKYYFCFNETSEEYFQIDVVNNRTECFALINANHTEVRWKNVKINF
DNVGAGYLALLQVATFKGWMDIMYAAVDSRKVEDQPQYEINIYMYIYFVIFIIFGSFFTL
NLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPQNIIQGMVF
DFVTQQAFDISIMILICLNMVTMMVETDDQSDETENILYWVNFVFIVVFTGEFVLKLFAL
RHYYFTNGWNIFDCVVVILSIVGMFLADLIEKYFVSPTLFRVIRLARIGRILRLIKGAKG
IRTLLFALMMSLPALFNIGLLLFLVMFIFSIFGMSNFAYVKRELGIDDLYNFETFGNSMI
ILFMITTSAGWDGLLAPILNYPPDCKPEMENPGTTVRGNCGNPSVGIFFFVMYIIVSFLI
VVNMYIAIILENFSVATEESADPLCEDDFESFYEIWEKFDPDACQFITFAKLPDFADTLE
HPLRVPKPNIIELIAMDLPMVSGDRIHCLDILFAFTKRVLGDSGDLDMMRQQMEERFVAA
NPSKVSYEPITTTLRRKQEEVSALLIQRAYRAHLARRGFVCKRRPANNKLENGGTNQEKK
EGTPSTASLPSYNSVTKPEKEKQDDNNDEKGRKERGRKQKAVRESKC
NT seq
5904 nt
NT seq
+upstream
nt +downstream
nt
atggccgcaccgctgctcgcacccccaggccctgatagctttaaaaagttcaccagggag
tctctggccaacatcgagacgcgcattgctgaggagaagaagaagaaacctgtcaagccc
agatctgacagcagtcatcgcgacgacgatgaggacagtgggcctaagcccaacagtgac
ctggaggcgggaaagagcgtgcccttcatctacggggacgctccctcgaaaatggtggca
gtgcctctggaggacttggaccctttctatttgaacaaaaaaacctttatagtgttaaac
aaagggaaaacaatctttcgttttagtgccacaccatcgttgtatatcattagccctttt
agcctgtttagacgaatagctattaaaattttgatacattcagttttcagcatgatcatt
atgtgtaccattttaaccaactgtgtgttcatgacattcagcaatcccccagaatggtcc
aaacaagtagagtacatgttcacagggatctacacctttgagtccctcacaaagattgta
gctcgaggtttttgtatagacggctttacatttctccgagatccctggaactggctggac
ttcatggtcatctctatggcatatgtaacagagtttgtggacctggggaatgtgtcagcc
ctgagaaccttcagggttctacgagctctcaaaactatttctgtcataccaggactgaag
accattgtgggggctctgatccagtcagtaaagaagctgtccgatgtgatgattctcact
gtcttttgtttgagtgtatttgctcttattggccttcagctctttatgggcaatcttcgg
caaaaatgtgtgatctggcccattagcaatgagacagtcacctacctggccaatggaagc
aaaggctttgacttcagtgaatacatcatgaatgacactaacttctacttcctacctggc
atgttagatgctttgctgtgtggaaatagctctgattctgggcgctgtccagagggttac
acctgtatgaaggcaggccgcaatccaaactatgggtacaccagcttcgactcattcggt
tgggcctttcttgctctctttcgactcatgacacaagacttctgggaaaatctataccag
ctgactttacgagcagcgggaaagacctacatgatcttctttgtgctggtgatctttgtg
ggctccttttacttggtgaatctgatcctggctgtggttgccatggcctatgaggagcag
aaccaggccaccattgaggaggctcagcggaaggaagatgagtttaaagccatgctggag
cagctcaaaaaacaacaagaggaggcacaggcccaggccatggccacatcagcagggaca
gtatcagaggatgctgtggagggtgatggaggaggacatctgtcccgcagctcctcagaa
gtgtccaagctgagctctaagagtgccaaagagcgacgaaacagaaagaaaaagtggaag
aaggagcaggagaaggagaaaggtgacactgagaaggcggtcaaatcagagtcggatgat
gccagtaagagaagtcgtttccgttttcctgataacaggcttggcaggaaggcctccatt
atgaatcagtctctgctgagtatacccggctcacccttcatgtcccgccataacagtcgc
agcagcatcttcagcttcaaaggccgtacccgggatgtcggctcagaaaatgagtttgcg
gatgatgagcacagcacagtggaagaaagtgaggaccgtcggggctctctgttcatcccg
tacaggcgcaacagctacagcggctacagccagggctcaatgcgcatcaacccactggct
cctcactcgggctgcaagaaaaacagcacggtcgactgcaatggcgtggtgtctctgatc
ggacccgggcacggccgtcttctgcctgaggccaccgaggtagatatgaaaagaaaacac
tcgggctccctgatggtgtcagtggaccagcttaacacgtcatttggacggaaagagcgt
gctaacagtgtgatgaccgtcatcactaatacactagtggaggaactggaggagtctcag
agaaagtgtccaccatggtggtacaaatttgccaacgtatttctgatctgggagtgttgt
ccactttggctgaaaattaaggaaatagtaaatttaatagtgatggacccatttgtggat
ttagccattacaatatgtattgtgctgaacacagtcttcatggccatggagcactaccct
atgactgaacaatttgaacatgtgctgtctgtgggaaacttggtgtttaccggtatcttc
acgactgagatggttgcaaagctggtagcaatggacccatactactactttcaggagggc
tggaacatatttgatggcttcattgttagcctgagtttggtggagttgatgctagctgat
gttgaaggactgtcagtgctcagatcctttagattgttaagagttttcaaactggctaag
tcctggcccactctaaacatgttgatcaagataattggaaactcagtgggcgctctgggg
aacctgacactggtgctggccatcattgtctttatctttgctgtggtgggaatgcagctg
tttggtaagagctacaaggactgtgtgtgtaagatcgccgaaagctgtgagctaccacgc
tggcacatgaacgacttctttcactcattcctaatcgtgttccgtgtgttgtgtggtgaa
tggattgagaccatgtgggactgcatggaggtggccgaccagaccatgtgcctgactgtc
tttatgatggtcatggtcatcggaaacttggtggtgctgaatctgtttttggccttgctg
ctcagctcgttcagcgctgataacctggctgccactgacgatgatggcgagatgaacaac
ctgcagatctcagccatccggattaagaagggcattgcttgggctaaagtccatgcgcga
ctcctgatggcacaagttctaaagaagtcgcctctagaggatgacgacaagccattggat
gacatgtacgagaagaaactgaacctcataggaaaccacacaggagtggacattaaatgt
gaacttgacttcgctaagaatggaaacggtacgaccagtggcatcggcagcagtgtggga
aagtacatcattgacgaggaacgcatgtccttcatccacaacccaaacctgactgtgcgt
gttcctatcgctgttggagagtcagactttgagaacctgaacacagaagatttcagcagt
gagtcagatgtggagaacagcaaagatctggatgacacaagttcttctgagggcagtact
atagatataaagcctgaggaggaggaggtggctgtggaggtggtggaggaatatctagat
ccagaggcctgctggactgatgcctgtgtagcacggtataaatgctgtgatgtatccatt
actgagggctggggaaagcactggtggtacctcagaaaaacctgctacctcattgtagaa
cacaactggtttgagactctcatcattttcatgattcttctcagctctggagctctggca
tttgaggatgtttacattgaacagaggaaaaccatccagatcattttagaatatgcagat
cgagtgttcacctatatcttcatcctggagatgttgctgaaatgggtagcttatggtttt
gtcaaatatttcaccaatgcctggtgctggctggacttcttcattgtggatgtgtcaata
gtgagccttatagctaatgcactgggatactcagacttgggccctattaagtctctgaga
actttgagagccctcaggcccctgagagctttgtcccgatttgagggcatgagggttgtg
gtgaacgctctggtcggagctatcccctccatcatgaatgtgttgttggtgtgtttgatc
ttctggctcatctttagtattatgggggtcaatatgtttgccggaaagtactacttttgc
ttcaatgagacatcagaggaatacttccaaatcgatgtggtcaacaatagaacagaatgt
tttgcgctcatcaatgcaaatcacactgaagttcgctggaaaaatgtcaagatcaacttt
gataatgtgggtgctgggtacctggcactcttacaagtggccacattcaaaggctggatg
gacatcatgtatgcagctgtggattctagaaaggttgaagaccaacctcaatatgaaatc
aacatctacatgtacatatattttgtcatcttcatcatctttggctccttctttacactt
aatctcttcattggtgttatcattgacaacttcaaccaacaaaagaaaaagtttggaggc
caggatatcttcatgacagaagaacaaaagaagtactacaatgctatgaagaaactgggc
tcaaagaaaccccagaagcccattcctagacctcagaacatcatccagggaatggtgttc
gactttgtcacacaacaagcttttgacatatcaatcatgatcctaatctgtcttaatatg
gtcactatgatggtggaaacagatgaccaatcagacgagacagaaaatattctttactgg
gtgaactttgtctttattgtggtctttactggggagtttgtgcttaagctctttgcacta
cgacattactacttcactaatggctggaacatcttcgactgtgttgtggtgattctgtca
attgtgggtatgttcctggcagacctgatcgagaagtactttgtgtcacctactctgttc
agggtgatccgtctggctcgaatcggacgtattctgcgtttaatcaagggggccaagggt
atccggactttactgtttgccttgatgatgtcacttcctgcattgttcaacattggtcta
ttgctttttctggtcatgttcatcttctctatatttggcatgtccaattttgcatacgtg
aaaagggagcttggcatcgatgacttgtacaacttcgaaaccttcggtaacagtatgata
atcttgttcatgatcaccacttcagcaggttgggatggcttgcttgcgcccatcctcaac
taccctcctgactgcaagcctgaaatggaaaacccaggaactacagtaagggggaactgt
ggtaacccttctgtgggaatcttcttctttgttatgtacattattgtatccttcctgatt
gtggtaaatatgtacattgctattatcttggagaacttcagcgtggccacagaggagagc
gctgatccattgtgtgaggatgactttgagtcgttttatgagatctgggaaaagtttgac
ccagacgcatgtcagtttatcacctttgccaagttgcctgactttgctgacacactggag
cacccgctacgcgtgcctaagcccaatatcattgaactgattgccatggacctacccatg
gtcagtggtgatcgtatccactgtttggacatcctttttgcctttaccaagcgggtactg
ggtgacagcggagatctggacatgatgcgccagcagatggaggagcgctttgtggcagca
aatccttccaaagtgtcatatgaacccatcaccaccacactgcgccggaagcaggaagag
gtctcagccttgctgattcagagagcctaccgtgcccatcttgcacgccggggctttgtg
tgcaaacgccggcctgccaacaacaagctagaaaatggagggacaaatcaggagaagaaa
gagggtacaccctctaccgcatctctgccatcctacaacagcgtgaccaagcctgagaag
gagaagcaggatgacaacaatgacgaaaaaggtcgcaaggagaggggccgaaaacaaaaa
gccgtcagggaatccaagtgctga
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