Trichomycterus rosablanca: 134317329 Help Entry 134317329         CDS       T09921                                  Symbol col7a1 Name (RefSeq) collagen alpha-1(VII) chain   KO K16628   collagen type VII alpha Organism trn  Trichomycterus rosablanca Pathway trn04382   Cornified envelope formation Brite KEGG Orthology (KO) [BR:trn00001]  09150 Organismal Systems   09158 Development and regeneration    04382 Cornified envelope formation     134317329 (col7a1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen fn3 VWA VWA_2 Kunitz_BPTI Interfer-bind Ig_DSCAM-DSCAML_C Pur_ac_phosph_N fn3_2 DUF4998 Motif Other DBs NCBI-GeneID:  134317329 NCBI-ProteinID:  XP_062854213 LinkDB All DBs Position 6:43257817..43346985 Genome browser AA seq 3074 aa AA seqDB search MWHRTLVVAVLLSFPYTSTAQGQCNNVVVADIVFLVDGSSSIGRTNFVLVKDFMAGIVRP FSKAVGTSGIRFGAVQYSDTARVEFTFTTYVNGTDLLNAIQNINYKGGNTRTGAGLKYIA ENFFSPSTTRDVPKIAILITDGKSQDSVQEPAQRLRNLGVKIFAVGIKSADQKELNLISS PPDSEFTSFIGNFRALSTLLPLLSPRVCRSSGGTYSSDGALSGPSDLRFSDETTNSIRFR WAPAGGPVTGYVVQYTPLSGLGQPLTSDLREVNERVAASQQVYVARQLRSGTEYLVSVIA QYPNSVGETVSGKARTRSVQTVSSLRLVQAGFFTLSLAWDRSSGTTQGYRITYRPRGEPA SLLQEQTVESDATSLTLDGLKSDTEYVINLYPLFPRDSNALSTLNARTLRLEGVQQLSVN TSSSNSVDVRWKGVTGARGYRLVWGPTIGQDLETVEVAGDSETHKLVNLNPNTEYLVTVI ALYNGETEGPASTTRFTIEQQVLRAISKGPTSIRLNWNQIRTARGYRLEWYKEGESNNIQ KQNFSQSTTSYELRDLQPSTDYIITLYTLYEGREESTTVSSVVGIVTDLRVLETFGSTVR LGWIRVLGATQYSILILNTESGLEQNLVVPGNQTTVDLSDLIEGVSYSVSVTALVGNIKG DPVTIYLRPASVLNKVTDLRVVNANSRRIRISWTGVSEATGYRVTWRQGSNAEQVRVLGS DVTAYTIEGLQPDESVIVGVAAVSDSQVGDVVTVTTRTSGYVGTVTGLRIVDVRPTRIRV SWSAVSRATGYKITWQRDDGVEETQNLPGDATSYTIDRLQQGTSYKISVSALSGSRQGPT ASLNARTASDEFVVGHVTNLQQESRGESIRISWVGVQGATAYRVLWRKSEGGDEQLQLVG GNITSVDLKQLEGGAQYDIQVVALIQNREGPPVSIRVTTASSETVPRVEGLRVEQSAAGG LRFYWSALRDVDGYRIYWRSSQGEAESSRRIDRDASSFTLDGLRPGLTYTIRFAAVRGGR EGPPVTIRETTAPLQVVTDLRAINTTQNSVLLGWNPVSGASEYVLRWQDEDEPDNGQTVT LPGTTNSFRVTGLRLGRQYRFTVQAMVFNNAGPETAVEERTVCVDGRLDVVFLVPTSRDR SALEEPLFSLLASAVGSLSSIGARDSQVGMVVYGAEPEVRFRLSRHSSREPLLREILSTP FTGRPGNNIGQAMTFTQQYLLSASAGRRAGVPGVVVIITDEKSSDDLIRAAAAVRNSGVT VLAVGLGRADQEELRRAVTDGSTQNLLTVRDAADLFRQHSELAELLCGIARGNGALGRNG TPGRDGPRGPAGPPGLPGSSVDPPQRGEKGERGFPGLDGSPGIPGRAGTSGAAGPPGLQG IPGVRGDPGEPGGTGSPGSKGQKGDRGDSGTDFGLPGRKGEPGVPGLPGSSGRPGLNGPK GEPGVPGLTGQDGRPGIQGNPGLSVKGEKGSRGEPGVGNGVAVKGDRGEPGNTGPSGPQG FQGPSGSKGSKGELGESIKGSPGLPGSQGDPGDRGPRGPPGETGSKGDRGQAGEPGLQGD RSERGPAGPIGEKGEAGKQGPTGPPGIRSFPGTNGTPGEKGAKGEPGGGPESVGRKGEQG QRGPPGPDGSQGEKGASGEKGDRGLPGIGTSGQPGLKGEPGDRGAPGLAGRAGIKGNQGE PGERGEPGSSGPAGPVGPRGKDGVKGDKGDDGLPGEDGSPGKPGERGLRGIAGQPGQPGD KGNPGDSGEPGRSGTPGPLGPRGQKGDQGIQGPPGPPGDAGDMQSLLKGERGEKGESGTP GANGSKGQQGDAGPQGSPGTRGADGQRGPVGGRGDPGERGSPGEKGERGAAGVDGRPGQD GKPGPPGSSGLRGDPGKTGEPGRDGLAGLRGPQGPPGPIGPPGAAGTPGKPGDDGKSGPP GKTGEDGVPGEDGRKGDKGESGSPGRDGQDGLKGDRGPSGPTGPTGQPGSPGVPGNIGPP GQVIYIKGADPIQGPQGPQGVPGSPGIPGDPGSRGERGVPGTKGDQGDPGEDGSPGKPGT AADVKRALSDNNIEIRDLQAVLEKKDIILQIPDFSKRTDKGQKGEKGDGGAPGPSGADGA RGLPGERGLKGDQGDKGSPGPQGPMGRAIGERGQEGPSGQAGEPGKPGIPGVPGRAGELG EAGRPGDKGERGEKGDKGDSGKSGVTGVAGPPGPKGDSIVQTMPGPRGLPGPQGNKGEDG VPGLPGPKGDRGFAGVRGEKGERGETGEKGRDGSPGLTGEAGKPGLDGKPGLPGFPGVLG RPGNPGEPGIRGLPGPMGANGPPGPLGVKGDQGEAGIGVQGPPGSQGIRGLPGIIGTPGA IGPQGPPGLPGQTGESGKPGVPGRDGIPGKEGTPGLPGKQGIAGPVGPPGTKGEQGDSGP PGKAVAGPPGVKGERGPSGETLPGVAGERGLPGLQGVKGDKGPAGIKGDKGIRGDPGEAG ENGDRGPLGPKGSKGESGLGITGPPGQTGPLGLKGDPGLPGPPGSPGPQGLAGTPGVAGQ RGEAGQPGTPGPPGDRGLQGFIGKAGNPGTPGTPGPPGPPGTAGTPGMKGDKGEVAVGVP GLRGERGDPGPRGEEGRPGLDGERGSSGFPGAKGAQGEKGATGLQGEKGVKGESLLVGGP PGEKGNKGETGDRGLKGPQGEKGLKGQEGPPGIQGLRGEPAERGSPGFQGARGPGGQKGE AGLPGVPGESGGPGKDGLPGTRGDKGENGVTGLRGPKGERGSKGVCGADGQKGERGDAGM NGRPGLPGRKGESGDVGSPGATGSSGKEGIVGPKGDRGFDGLLGPKGEQGEKGERGPPGI PGPPGPRGVDGPPGLTGPQGLAGVKGPEGLQGQKGERGPPGPASLGPRGIPGIPGERGEQ GELGLDGARGEKGEPGMTEDEIRSYVRTEMSQHCGGGEIPSRPVVSTYRSRSSTSPERSL TQGDEEAREMHVVLNANDPDYEHIYSIESYDDAMDEIVDFTPSVSESDGKHTTIDEQNAG RKKREIKGEDPCILPMDEGGCSRYTLRWYFNSQAGDCRPFIYSGCEGNANRYTHKEDCEK QCLKQKGAALDGAR NT seq 9225 nt NT seq  +upstreamnt  +downstreamnt atgtggcaccggacattggtggttgctgtgttgctgtccttcccatacacatctacagct caaggtcaatgtaataacgttgttgtggcggatattgtgttccttgtggatgggtcatcc agcatcggacgtaccaactttgtcttggtgaaggacttcatggcagggattgtcagaccc ttctccaaagcagtgggaacatctggcattcgttttggagcagtgcagtacagcgacaca gcaagggtggaatttacctttactacatacgtgaatggcacagacctgttaaatgctatc cagaacatcaactataaaggaggaaatactcgcactggagctggccttaaatacattgca gaaaacttcttcagtcccagcactaccagagatgtgcccaagattgctattttgattaca gatggaaaatctcaggatagtgttcaggaacctgctcagagactacgcaacttaggagtt aaaatatttgcagtgggtattaagagtgcggatcagaaagaactaaacctcatttcttcg cctcctgatagtgaatttacctcctttattgggaattttagggctctcagcactctgcta cctctgctgtctcctcgtgtgtgtagatcatctggaggcacctattcaagtgatggtgcc ctcagtggcccatctgacttgaggttttcagatgagaccactaattccatccgatttcgg tgggcaccagcagggggtcccgtaactggatacgtagtgcagtacactcctctttctggt ctgggtcagccactgacatcagacctgcgggaggtaaatgagagagtagcagctagtcag caggtctatgtggcacggcagctacggtcgggcacagaatacttggtgtcagttattgcc cagtatcccaacagtgtgggcgagacagtgtctggcaaagctcgaacaaggtctgtacag actgtgtcctctctgcgcttggtgcaggctgggttttttactttatccttggcatgggac cgttcctctggcaccacacagggttacaggattacatataggcccagaggtgaacctgct agcttgttgcaggagcagacagttgaatcggatgccacttctctcacactggatggtctt aaatcagatacagaatacgttattaacctgtatcccctttttcctcgcgacagtaatgca ctatctacacttaatgcccgcacattgcgtttagaaggagtgcaacaactctctgttaac acaagctcaagcaacagtgttgatgtgcgctggaagggagtaactggtgccagaggatac aggcttgtctggggacctacaataggacaagatctagagactgtagaggtggcaggtgac agtgagactcataaactggtaaacctgaaccctaacacagaatacctggttactgtcatt gctttgtataatggagaaacagaagggcctgcttcaaccacacgcttcacgatagagcag caggttctgagagccatttcaaaaggacccaccagcatccgactgaactggaaccaaatc cgaacagccagaggctaccgactggagtggtataaagaaggagagagcaacaacattcaa aaacagaacttctctcagtctaccacaagctatgagctcagagatcttcagccaagtact gattacatcataactctgtacacactctacgaaggacgagaggagtccacaacagtgtct agtgtggttggtatagtcaccgatctccgagtgctcgagacatttggcagtactgtacgg ctgggatggataagggtgctcggagcaacgcagtacagcattctcatactgaacactgaa tctgggttagagcaaaacctggttgttcctggaaaccagacaacagttgacttgagcgac cttatagaaggtgtatcctactccgtaagtgtgactgcgctagtgggcaacatcaaagga gatccagtcactatctatctcagaccagcatcagttctgaataaggtgacagacctgcgt gtggtgaatgctaacagtcgacgaatccgaatttcatggactggagttagcgaggcaaca ggttatagagtcacttggagacaaggcagtaatgcagagcaggtccgtgtgcttggttca gatgttactgcttacactatagaagggctacagccagatgaatctgttattgtgggtgtg gctgctgtaagcgatagccaggtcggagatgtagtgactgtcactaccagaacgtctggt tacgtagggacagtcacaggcctgcggatcgtcgatgtccgtcccacgcggattcgagtg tcttggtcagctgtatccagggcaacaggctataaaatcacttggcagcgggatgatgga gtggaagaaactcagaacttacctggtgatgctacatcctacaccattgataggctgcag caaggcacctcctacaaaatatctgtttctgctctgagtggctccaggcagggacccact gcctccctgaatgccaggacagcttcagatgagtttgtggttggacatgttactaattta cagcaagagtctcgaggggaaagcatcagaatcagctgggttggagttcagggagcaaca gcatatagagtactgtggaggaaaagtgaaggtggagatgagcagcttcagttggtaggt ggcaatataacatcagtggatcttaagcagctggaaggaggagcccagtatgacattcag gttgtggccctgattcagaacagagaggggcctccagtctccatcagagtcaccacagca tcatccgaaactgtgcctagagtagagggactgcgtgttgaacagtcagctgcaggaggg ctgcgtttctactggagtgcgctgagagatgttgatgggtatagaatatactggaggtct tcacaaggtgaggctgaatcaagtcgtcggattgatagagatgcaagctcgtttaccttg gatggcctccgtcctgggttgacttacactatacgatttgctgctgtgagagggggcaga gaaggtccacctgtcactatcagagaaaccactgctccattacaagttgtgacggatctc cgggcaataaatactacccagaactctgtgttgcttggttggaatccagtttctggtgca agtgaatatgtactgcggtggcaggatgaagacgaaccagacaatggccagacagtcact cttcccggtacgaccaactcgttccgcgtgactggtctgaggctgggtcgtcaataccgt ttcactgtgcaggctatggtcttcaataatgcaggtccagagactgctgtggaagaacgc acagtttgtgtggatggtcgtttggacgtggtgtttttggttcccacctctcgtgatcgc tctgcattggaggaacctcttttttctctgcttgcaagtgctgtgggatctctctccagt attggagccagggactcccaggtgggaatggtggtctatggtgcagaacctgaagtgcgt tttcgtctgagtcggcatagcagcagagaacccttactaagggagattctgtctacccct tttactgggagaccaggaaataatataggtcaggctatgacgtttactcagcagtatctg ctaagtgcaagtgcaggtcgaagggctggtgtgccaggtgtggttgtcatcatcactgat gagaaatcatctgatgatcttatccgtgctgctgctgcagtcaggaattccggtgtgacc gtgttggctgttgggcttggacgtgcagatcaagaggagctgcgcagggcagttacagat ggcagcactcagaatctgctaactgttcgtgatgcagctgatctcttcagacaacactct gaactggcagaactgctttgtggcattgctagaggaaatggtgcattgggtcgaaatggt acacctggtcgtgatggccctagaggacctgcagggccacctggtcttccaggatccagt gtggacccaccacaaagaggagaaaaaggagaaaggggatttccagggctggatgggagt ccaggaatccctgggcgtgcaggtacttctggtgctgcaggccctcctggcttgcagggg atacctggagtcagaggggaccctggagaacctggtggcaccgggtctcctggatcaaaa gggcaaaaaggtgacaggggtgattcaggaactgattttggcttgccaggacgcaaagga gagccaggagttcccggtctaccagggtcttcgggacgaccaggtttgaatgggccaaag ggagaaccaggagtaccagggctaacaggacaagatggtcgccctgggatacagggcaac cctgggctgtcagtaaagggtgagaaaggaagccggggagaaccaggtgtggggaatggg gtagcagtaaagggtgataggggtgaaccaggaaatacgggaccgtcagggcctcagggc tttcaaggaccgtctggatcaaaaggttccaagggagaactgggggagagcataaagggc agtccagggctccctgggagccaaggagatccgggtgatcggggtccgaggggtccaccc ggtgaaactggaagcaagggtgaccgggggcaggctggcgagcctggactacagggtgac agaagtgagagaggaccagccggtccaataggagaaaagggcgaggcaggtaaacaagga ccaactggacccccaggaatcagaagctttcctggcacaaatggtactccaggcgagaag ggagctaaaggagaaccaggcggtggcccagaatcagttggaagaaaaggggagcagggc cagagaggacctccaggtcccgacggatctcaaggtgaaaaaggagcatcaggagaaaaa ggagataggggtcttcctggaattggtacatctggccaacctggacttaaaggagaaccg ggtgatcggggtgctcctggattagctggcagagctggcatcaagggcaaccaaggtgaa ccaggagagagaggagaaccaggcagttctggtcctgcaggaccggtcggccccagagga aaagatggtgtaaaaggtgacaaaggagatgacgggcttcctggggaagatgggtcacct ggtaaaccaggagaaagaggactgaggggtattgcagggcagccgggtcaaccaggcgat aaaggaaacccaggggattctggcgagccaggacgaagtggcactccaggacctctagga ccaagagggcagaagggagatcagggaatacagggtccccctggccctcctggagatgcc ggagatatgcagtctcttttaaagggagaaagaggagaaaaaggagagtcaggtactcct ggggcaaatggtagcaaaggtcagcaaggggatgcaggaccacaaggttccccaggaaca cggggagctgatggtcagcgtggaccagtaggaggcagaggcgatccaggggagcgaggc agcccaggagagaagggagagagaggagctgcaggagtggatgggcggcctggtcaggat ggaaagcccggcccacctggatcttcaggtttacggggtgatcctggtaaaactggagaa cctggccgagatggcttagcaggactgagaggaccacaggggcccccaggaccaattggg cccccaggagctgctggcacacctggtaaaccaggtgatgatggaaagtctggacctcca ggaaagactggtgaagatggcgtccctggggaggatggcaggaagggtgacaagggagaa tctggctctccaggcagagatggtcaagacgggctgaagggggatcgtggcccttcagga cccactggaccaactgggcagcctggatccccaggggtcccaggtaacattggaccacca ggacaggtgatatatattaaaggagctgatcctattcaagggccccaagggcctcaagga gtcccaggatcaccaggaattccaggcgatcctggatcaagaggggagagaggtgtacca ggcacaaagggagatcagggagatccaggagaagatggatcacctggaaaaccaggaacc gctgcagatgtgaagagagcactttcagataataacattgagattagggatctgcaggcg gtgctggaaaagaaggacataatactgcagatacctgacttttcaaagagaacggataaa ggacaaaaaggagagaaaggagatggaggagctccaggcccgtctggtgcagatggtgct cgaggcttaccaggtgagcgaggtctgaaaggtgatcagggtgacaaggggtctccaggt ccccagggccccatgggaagggctataggagaaaggggccaggagggtccttctggacag gcaggggagcctggcaaacctggcattccaggtgtaccaggacgagctggagaactcgga gaggctggtagacctggagataagggagaaagaggagaaaaaggagacaaaggagattct ggtaaatctggagtcactggtgtagcaggaccccctggacctaagggtgactcaatcgtt caaaccatgcctggtccacggggtctgccaggccctcagggtaataagggagaggatgga gtgccagggcttcctgggcctaagggagatcggggttttgcaggtgttcgtggagagaag ggagagagaggggagaccggggaaaagggcagagatggctctcctgggttaacaggagaa gctggaaaacctggactggatggaaagccgggcttgcctgggttcccaggagtgctgggc agaccgggaaatcctggagaaccaggcattcgagggttacctgggccaatgggtgcaaat ggacctcctggaccacttggtgtgaagggtgaccaaggagaggcaggaattggagttcaa ggccctcccggatcgcagggcataagaggactacctggaattataggcacaccaggagct attggcccacaaggacctccagggcttccaggacaaacgggagagagtggaaagcctggg gtccctggtagagatggtatacctggaaaagaaggaacgcctgggttgcccggaaaacag ggtattgccggacccgtgggccccccaggaacaaaaggagagcaaggagatagtggccca ccaggaaaggcagtagctggaccacctggagtaaagggtgagaggggtccttctggtgaa actttgccaggtgttgctggagagagaggtctacctggattacagggtgttaaaggagac aagggaccagccggcattaaaggagataaaggaataagaggcgatcctggggaggcaggt gaaaatggagacagaggaccactggggcctaaaggatctaaaggggaatcaggcctggga ataactggccctccaggacaaactggaccccttggcttaaagggtgatcctggtcttcca ggccctcctggatcaccaggtcctcaaggtctagcaggaacaccaggagtagcaggtcaa agaggtgaagcaggccagccaggaactccaggacctcccggagacaggggtttgcaaggc tttataggcaaagcaggaaacccagggacacctggtactcctggaccccccggaccacca ggtactgcaggtacacctggcatgaagggtgataaaggtgaagttgcagtaggagtacca ggactcagaggagagagaggtgatccagggcctcggggagaagaaggacgacctggactg gatggagaaagaggttcttcgggatttccaggtgccaaaggagcacaaggagaaaagggt gcaactggacttcagggagagaaaggagtgaaaggtgaaagtctgttggttggtgggcct cctggtgaaaaaggaaacaagggagaaactggagacagagggcttaagggtcctcaaggt gaaaaaggcctaaaaggacaagagggaccaccagggatacagggtctgaggggagagcct gcagagagaggttcccctggatttcagggtgcacgtgggccaggaggacagaagggagag gcaggactgcctggggttccaggagaatctggtgggcctggcaaagatggccttcctggc accagaggagacaagggagagaacggtgtgacaggattgcgtggacctaagggggagcgt ggctccaaaggagtgtgtggagcagatggacaaaaaggagaaaggggagatgctggaatg aacggtagaccaggtttacctggaagaaaaggagagtcgggtgatgtgggatctccaggg gccactggaagttcaggaaaagaaggaattgttggacccaaaggtgatcgaggttttgat ggtctattgggaccaaagggagaacaaggagaaaaaggtgaaaggggtccacctggtatc cctggcccaccaggtccacgaggtgtagatgggccacctggtttgactggtccacagggg cttgctggagtaaaaggtcctgagggactgcaggggcaaaagggtgaacgaggtccccca ggacccgcttcgcttggccctagaggcattccaggaattccaggagagagaggagaacaa ggtgaattaggccttgatggcgccagaggagaaaaaggagaaccgggcatgacggaggat gagattcggtcttatgttcgtactgagatgagccagcactgtggtggtggagaaattcca tctcgtccagtggtttcaacttaccgaagtcgctcttccacgtcccctgagaggtcacta acccaaggggacgaggaggctcgggaaatgcatgttgttttaaacgcaaacgaccccgac tatgaacacatctactccatcgagagctatgatgatgccatggatgaaattgtggacttt accccctcagtcagtgaaagtgatggcaagcacaccacaattgatgaacaaaatgcaggg agaaagaaaagagaaattaaaggtgaagatccctgcatcttgccaatggatgagggtggg tgttccagatatactctgcgctggtactttaattcccaggcgggcgactgtagacccttc atctacagtggctgtgaaggaaatgctaaccgttacacacacaaggaggactgtgaaaag cagtgccttaaacagaaaggagctgctcttgatggtgcacggtag

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