Trichomycterus rosablanca: 134317817
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Entry
134317817 CDS
T09921
Symbol
mbd4
Name
(RefSeq) methyl-CpG-binding domain protein 4
KO
K10801
methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
Organism
trn
Trichomycterus rosablanca
Pathway
trn03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
134317817 (mbd4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
trn03036
]
134317817 (mbd4)
03400 DNA repair and recombination proteins [BR:
trn03400
]
134317817 (mbd4)
Chromosome and associated proteins [BR:
trn03036
]
Eukaryotic type
Heterochromatin formation proteins
MBPs (metylated DNA binding proteins)
134317817 (mbd4)
DNA repair and recombination proteins [BR:
trn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
134317817 (mbd4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MBD
HhH-GPD
YhiY
Motif
Other DBs
NCBI-GeneID:
134317817
NCBI-ProteinID:
XP_062854616
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All DBs
Position
7:24548061..24564394
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AA seq
380 aa
AA seq
DB search
MDTQGFPPGWTKETRQRKQGKTAGKLDTYIISPEGKRFRSKGELQKYLRTEECAHLNLDM
FDFTRPKNKKSNTERTSQKEHKEEKENTNQTAESFDPVAAVGAVQNEGMETKPNSNDDQI
HETENEKQTLVKEEQEGLEIDKEDASSSKNDAKLMNVPGINIHAASDSEEEEKKDARAEQ
VEVKEGKQKNTETTNGICSPIRSSQNRTKLLLDKKRTSPYFRGKSDGLSPPRRKALRKWT
PPRSPFKLVQETLFHDPWKLLVATIFLNRTSGKLAIPILWQFFERYPSAEVTQTSDWKPL
ADLMQPLGLNALRAKAIIRFSDEFLTKSWRYPNELHGIGKYGNDSYRIFCVGEWREVTPS
DHKLNYYHKWLWENQERLGI
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atggacacacaaggtttccctcccggatggacaaaagagacgagacagcgaaagcaaggc
aagacagctggcaaactggacacctacattatcagtcctgagggaaaacgcttcagatca
aaaggagaactccaaaagtacctgcgcactgaggaatgtgcccatctgaacctggatatg
tttgactttactagaccaaaaaataaaaaatcaaacactgaaaggacttcacagaaagaa
cataaagaagaaaaggaaaatacgaatcaaactgcagaaagttttgatccagtagcagca
gtgggagcggtgcagaatgaggggatggagacaaagccgaacagtaatgacgaccagatt
catgagacagagaatgaaaagcaaacgcttgtaaaagaagagcaggaaggactagagatt
gataaagaagacgccagcagcagtaaaaacgacgccaaacttatgaatgttcctggtata
aatattcatgctgcatcagacagtgaggaggaggagaaaaaggatgcgagagcagaacag
gttgaagtaaaggaaggaaagcagaagaacactgagactacaaacgggatttgctcgccc
atcagaagctcacaaaacaggacaaagttattattagacaagaagagaaccagtccatac
ttcagggggaagagtgatggtctcagtcctcctagacgtaaagcattaagaaagtggact
cctcctcgctcacccttcaaactggtacaggaaaccctgttccacgatccctggaagctt
ctagtggccaccatcttcctcaacaggacgagtggcaaactggcaatacccatattgtgg
cagttttttgaacggtacccgtctgcagaggtaacacaaaccagtgactggaagccactg
gctgatctcatgcagccactgggcctcaacgccctccgagccaaagcaatcatccgcttt
tctgacgaattcctcaccaaatcatggcgatatcctaacgaattacacggcattggtaaa
tacggcaacgattcgtaccgcatcttctgtgtgggagaatggagagaggtcaccccaagt
gatcacaaactgaactattatcacaagtggctgtgggagaaccaggaacgattagggatc
tga
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