Trichomycterus rosablanca: 134317864
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Entry
134317864 CDS
T09921
Symbol
pabpc1l
Name
(RefSeq) polyadenylate-binding protein 1-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
trn
Trichomycterus rosablanca
Pathway
trn03015
mRNA surveillance pathway
trn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
134317864 (pabpc1l)
09123 Folding, sorting and degradation
03018 RNA degradation
134317864 (pabpc1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trn03019
]
134317864 (pabpc1l)
03041 Spliceosome [BR:
trn03041
]
134317864 (pabpc1l)
Messenger RNA biogenesis [BR:
trn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
134317864 (pabpc1l)
mRNA cycle factors
Stress granule specific factors
134317864 (pabpc1l)
Spliceosome [BR:
trn03041
]
Complex C
Other components
Complex C specific factors
134317864 (pabpc1l)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_MUD2_C
RRM_5
RRM_occluded
RRM_3
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
134317864
NCBI-ProteinID:
XP_062854662
LinkDB
All DBs
Position
7:33505561..33520026
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AA seq
650 aa
AA seq
DB search
MNSGGQVYPLASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQ
QPADAECALDTMNYEVIKGRPIRIMWSQRDPCLRKSGVGNIFIKNMDESIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAANRAIGTMNGMLLNDRKVKEAGKEQECSSA
PVSPLWDKCQLFTFRFVGHFKSRKEREAEYGAKAMEFTNVYIKNFGEDFDSEKLRGIFSE
YGKTLSVRVMTDEKGQSRGFGFVNFENHEDAQKAVAGMNGKEMNGRILYVGRAQKRLERQ
SELKRKFEQIKQERLNRYQGVNLYVKNLDDGIDDDKLRKEFAPYGTITSAKVMTEGGHSK
GFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRLASVRAIP
GPVMPTYQQSSGYYMPSMPQPQGRAFYNAVPNLRPVPRFATQAPRPQAPYSAQLVRQATP
RRTSTPISTVRQASTQAPGVVNTQRMAHIGTQTAGGRTMPMVRGVSQYKYSSGVRNMQQV
ITVPAPILQQVMPHPVMEPAVHVKGQEPLTPSMLAAAPLMEQKQLLGERLYPLIQALHPN
LAGKITGMLLEIDNSELLHMLESPESLHAKVEEAVAVLQAHQAKEMSPKK
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtggtggtcaggtgtatccgctggcttcactctatgtgggtgacctgcatcca
gatgtcacagaggccatgctgtatcaaaagttctcaccagccggacccatcatgtccatc
cgtgtgtgtcgagacatcatcacgcgcaggtcccttggctatgcctacatcaacttccag
cagccagctgatgctgaatgtgcgctggacaccatgaactacgaagtgataaagggtcgg
ccaatcaggatcatgtggtcacaacgagatccttgtctgaggaagtctggagtgggaaac
atctttatcaagaacatggatgagtccatcgacaacaaggcgctttacgacaccttctct
gcctttggaaacattttgtcatgtaaggtggtatgtgatgaaaatggctcaaaaggttac
ggatttgtgcactttgagacacaggaggcagctaatcgagctatcggcaccatgaacggc
atgctgctgaacgaccgcaaagtaaaagaggcaggtaaagagcaggaatgcagttcagct
ccagtctctcccctttgggacaaatgtcagctgttcacatttagatttgttggacatttt
aagtctcgtaaggagcgagaggcagaatatggagccaaggccatggagtttaccaatgta
tacatcaagaactttggagaggactttgacagtgagaaactgcgtggcatcttctctgag
tatgggaaaaccctgagtgttcgtgtgatgaccgatgaaaaggggcagtctcgtggattt
ggcttcgtgaactttgaaaaccacgaggacgcacagaaagcagtagcagggatgaacggg
aaggagatgaacgggaggattctgtatgtgggtcgagcccagaagagactggagaggcaa
tctgagctcaaacgcaagtttgaacagatcaagcaagaacgcttgaatcgttaccagggc
gtcaatctctatgtgaaaaatctggacgatggcatcgatgatgacaaactgagaaaagag
tttgccccatatggtactattaccagtgctaaggtgatgactgaaggaggccacagtaaa
ggctttggcttcgtgtgcttctcgtctcccgaggaggccactaaagccgtgactgagatg
aacggccgcatcgtcagcactaaacctctttatgtagccctggctcaaagaaaggaggag
cgcaaagccatccttaccaaccagtacatgcagaggctcgctagtgtgagagccattcct
ggccctgtcatgcccacctaccagcagagctccggctactatatgccatctatgccacag
cctcagggacgtgccttctacaacgctgtaccaaacctgcgtccagtgccacgttttgcc
acccaagctcccagaccacaggctccgtactcggctcagttagtcaggcaagcgacgcca
cgcagaacctccacccccatcagcacagtgcgccaggcctccacccaggctccaggggtt
gtcaacacacaaaggatggctcatattggaacccagacagcaggtggacgaaccatgcct
atggtgagaggagtcagtcaatacaaatactcaagtggagttcgaaacatgcagcaggtt
atcacagtgccagctcccatcctacaacaggtgatgcctcatccagttatggagcctgcc
gttcatgttaaaggtcaagagcccctcactccctcaatgttggcagctgcaccactcatg
gagcagaaacaactactcggtgaacgtctgtatccactgattcaggcccttcatcctaac
ctggctggcaaaattactggcatgctgctagaaatagacaactctgagcttctgcacatg
ctggaatccccagagtcccttcatgccaaggttgaagaggcggtggctgttcttcaagct
catcaagccaaggagatgtcacctaagaaataa
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