Trichomycterus rosablanca: 134318103
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Entry
134318103 CDS
T09921
Symbol
polb
Name
(RefSeq) DNA polymerase beta
KO
K02330
DNA polymerase beta [EC:
2.7.7.7
4.2.99.-]
Organism
trn
Trichomycterus rosablanca
Pathway
trn03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
134318103 (polb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
trn03400
]
134318103 (polb)
Enzymes [BR:
trn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
134318103 (polb)
DNA repair and recombination proteins [BR:
trn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
134318103 (polb)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
134318103 (polb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_palm
DNA_pol_lambd_f
HHH_8
DNA_pol_B_thumb
HHH_5
NTP_transf_2
HHH_2
Cdd1
Motif
Other DBs
NCBI-GeneID:
134318103
NCBI-ProteinID:
XP_062854926
LinkDB
All DBs
Position
7:3190867..3200944
Genome browser
AA seq
336 aa
AA seq
DB search
MSKRKAPQETLNEGITDFLIELANYEKNVNRAIHKYNAYRKAASVIAKYPSKIKNGTEAK
KLDGVGAKIAEKIDEFLTTGKLRKLEKIRNDDTSSSINFLTRVTGIGPAAARKFYEEGVK
SLDDLRKIEHKLNHHQQIGLKYFEEFEKRIPRSEMEQMEALIVQELEELDPVYIGTICGS
YRRGAGSSGDIDILLTHPKFTSESEKQPKLLHAVVEHLESIGFITDTLSKGDTKFMGVCQ
LQRNDEDENDHDHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTLALEKGFTLNEYTIR
PLGVTGMPGEPLLVDSEKDIFDYIHMKYKEPKDRSE
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgagtaagagaaaagctccacaggaaactttaaatgaaggaatcactgattttctcatc
gaattggccaactatgaaaagaatgtaaacagagccatccacaagtacaatgcctacagg
aaagccgcctctgtgattgctaaatacccgtccaagattaaaaatggcactgaagctaaa
aaactggatggagttggtgcgaagattgctgaaaaaattgatgagtttttaaccactggg
aagctgcgcaaactggaaaagattcgcaatgatgacaccagctcctctatcaactttttg
actagagtaactggaatcggaccagctgctgctcggaaattctatgaggaaggcgttaag
agtctggacgatctgcgcaagatcgagcacaagctgaatcaccatcagcagattggctta
aagtactttgaagaatttgagaaaagaattccacgctcagaaatggaacaaatggaggcg
ctgatagtgcaagagttagaagagttggatccagtgtacatcggcactatctgtggcagc
tacagacgaggagcagggtcgagtggtgatattgatatcctgctaacccaccccaagttt
acctccgaatctgagaaacaaccgaaactgcttcacgctgtggtggagcacctcgagtct
atcggcttcattacagacactctgtctaaaggagataccaaattcatgggtgtgtgtcag
ctgcagagaaacgatgaggatgaaaacgatcatgatcacaggcgtattgatatcaggtta
attcctaaagatcagtattactgtggtgtgctttacttcaccgggagtgatatattcaat
aagaatatgaggactcttgctctggaaaagggtttcaccctcaacgagtacaccatccgt
ccattaggagtcactggtatgcctggagagcccttactggtggacagtgagaaggacata
tttgactacatccacatgaaatataaagagccgaaggaccgcagtgaatga
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