Trichomycterus rosablanca: 134318186
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Entry
134318186 CDS
T09921
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a
KO
K19719
collagen type II alpha
Organism
trn
Trichomycterus rosablanca
Pathway
trn04510
Focal adhesion
trn04512
ECM-receptor interaction
trn04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134318186 (col2a1a)
04518 Integrin signaling
134318186 (col2a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134318186 (col2a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
trn00536
]
134318186 (col2a1a)
Glycosaminoglycan binding proteins [BR:
trn00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134318186 (col2a1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
134318186
NCBI-ProteinID:
XP_062855060
LinkDB
All DBs
Position
7:complement(12095451..12124620)
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AA seq
1493 aa
AA seq
DB search
MFRFVDSRTVLLLVATQCILLTVVRCQQEDDQEDLGGCIQDGQHYEDRAVWKPEACRVCV
CDSGSVLCDEVICEDLKDCANPIIPDGECCPICPADTDQLSGPLSHKGQKGEPGEILDAV
GPRGPPGPMGPSGEQGSRGERGPKGEKGIAGPRGRDGEPGTPGNPGPPGPSGPPGPSVPG
LGGNFAAQMAGGFDEKSGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGSSGEAGEPG
PAGAMGPRGPPGSPGKSGSDGENGKPGKSGDRGAPGPQGARGFPGTPGLPGIKGHRGHPG
LDGAKGETGAAGAKGESGASGENGAPGPMGPRGLPGERGRPGPSGAAGARGNDGLTGPAG
PPGPVGPAGAPGFPGSPGSKGEAGPTGARGPEGAQGSRGEGGTPGSPGPAGAAGNPGTDG
IPGAKGSAGAAGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIAGFKGDSGPKGERG
VAGPQGVPGPTGEEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLIGAKGAPGDRG
VPGLSGPKGAGGDPGRPGEPGLPGARGLTGRPGDSGPQGKVGPTGAPGEDGRHGPPGPQG
ARGQPGVMGFPGPKGANGEGGKPGEKGLVGSPGLRGLAGKDGETGTAGPSGPAGPAGERG
EQGQPGPSGFQGLPGPAGSPGESGKPGDQGVPGEGGAPGAAGPRGERGFPGERGSAGAQG
LQGPRGLPGTPGTDGPKGAIGPAGALGAQGPPGLQGMPGERGSAGISGPKGDRGDTGEKG
PEGAPGKDGSRGLTGPIGPPGPSGPNGAKGENGAIGPTGPGGARGAPGDRGEVGPPGPAG
FAGPPGADGQPGTKGEQGESGQKGDAGSPGPQGPSGAPGPVGPTGVTGPKGARGAQGAPG
ATGFPGAAGRVGPPGPNGNPGSAGPAGPAGKDGPKGIRGDAGPPGRPGDAGLRGPAGSPG
EKGEPGEDGPSGPDGPSGPAGLAGQRGIVGLPGQRGERGFPGLPGPGGEPGKQGASGGAG
DRGPPGPVGPPGLTGPAGETGREGNPGSDGPPGRDGAAGVKGERGNTGPIGAPGAPGTPG
STGPAGPVGKQGDRGENGPQGPAGAPGPAGARGMAGPQGPRGDKGEAGEAGERGQKGHRG
FTGLQGLPGPPGSTGDQGAAGPSGPSGPKGPPGPSGPFGKDGSNGMPGPIGPPGPRGRSG
ESGSAGPPGNSGPPGPPGPPGPGIDMSAFAGLGQTEKGPDPLRYMRADEASSNLRQHDVE
VDATLKSINSQIEDIRSPDGSRKNPARSCRDLKLCHPDWKSGEYWVDPNLGCAVDAIKVY
CNMETGETCVNPSTRSIPRKNWWSSKSKGQKHVWFGESMNGGFHFSYGDKSQTPHMASIQ
MNFLRLLSSDASQKITYHCKNSVAYMDESTGNLKKALLLQGSNDVEIRAEGNSRFTYSVL
EDGCQKHTGQWGKTVIEYKTQKTSRLPIVDVAPMDIGSPNQEFGVDIGPVCFL
NT seq
4482 nt
NT seq
+upstream
nt +downstream
nt
atgttcagatttgtggattcacggactgtcctgctacttgtagcgacacaatgtatttta
ctaaccgttgtcagatgtcagcaagaagatgaccaggaggacttaggcggctgcatccag
gatggccagcattacgaagaccgtgcagtgtggaagccagaggcgtgtcgtgtctgtgtg
tgtgattcggggtctgtgctgtgtgatgaggtcatctgcgaggatctgaaggattgcgcc
aatcccatcattccagacggagagtgctgccccatctgccctgctgataccgaccagctt
agcggtccgctttctcacaagggacaaaaaggagaacctggcgaaattttagatgctgta
ggaccaagaggaccacctggacccatgggaccatctggagagcagggatcacgtggagaa
agaggacctaagggtgagaagggaattgcaggtccaagaggaagagatggtgagcccggc
actccaggtaaccctggaccccctggaccttccggaccaccaggcccaagtgtccctgga
cttggaggaaactttgctgcccagatggctggtggttttgatgagaaatctggaggagct
cagatgggtgtgatgcagggaccaatgggccccatgggtccccgtggtcctcctggccca
agtggagcacctggcccacaaggattccaaggcagctctggtgaggctggcgaacctgga
cctgctggcgctatgggacctcgcggcccacctggatcacctggaaaatctggaagtgat
ggtgagaatggtaagcctggtaagtctggtgaccgtggagcccctgggcctcagggagct
cgtggattccctggaactcctggacttcctggcatcaagggacacagaggacacccaggt
cttgatggcgccaagggagagactggagctgctggagctaagggagagtctggtgcctct
ggtgagaatggcgctcctggaccaatgggccctcgtggtcttcctggtgagagaggacgc
cctggaccttctggagctgctggtgccagaggtaatgatggtcttactgggcctgctggt
cctcctggtcctgttggtcctgctggtgctccaggtttcccaggatctcctggttccaag
ggtgaggctggacctactggtgctcgtggtcctgagggagcccaaggatcccgtggagaa
ggtggtactccaggatctcctggacctgctggagctgctggtaaccctggtactgatggt
attcctggagccaaaggatctgctggtgccgctggtattgctggtgccccaggttttcca
ggaccccgtggcccacctggacctcagggagctaccggacctctaggccccaagggtcag
agtggagaccctggtattgcaggatttaagggtgattctggacctaaaggagagcgtggt
gttgcaggacctcagggtgttccaggcccaactggagaggagggtaagagaggacctaga
ggagaacctggtgctgctggccctcttggaccccctggagagagaggtgctcctggtaac
cgtggattcccaggtcaggatggtcttattggtgctaagggtgcacctggtgatcgtggt
gttccaggactgtctggaccaaaaggtgctggtggagatcctggtcgtcctggcgagcct
ggtcttcctggagcaagaggtctcactggtcgccctggagattctggaccccaaggaaaa
gttggccctactggtgcccctggtgaggatggtcgccatggtccccctgggcctcaggga
gctcgtggacagcctggtgtgatgggattccctggacctaaaggagctaatggtgagggt
ggcaaacctggagagaaaggacttgttggcagccctggtctgagaggtttggccggtaaa
gatggtgagactggaacagctggtccttctggccctgctggacctgctggcgagaggggt
gaacaaggacaacctggcccatctggcttccagggtctgcctggacctgctggatcccca
ggagagagtggcaaaccaggtgaccagggtgttcccggagagggcggtgctcctggtgca
gctggacccagaggtgagcgtggtttccctggtgaaagaggaagtgcaggtgcccagggt
cttcagggcccaagaggacttcctggaactcctggaactgatggacctaagggtgcgatt
ggcccagctggtgctcttggtgctcagggtcctcctggactgcaaggtatgcctggtgag
agaggatctgctggtatctctggacccaagggagacagaggtgacactggagagaaagga
cctgagggtgctcctggcaaagatggctcaagaggtttgactggtcctattggtccacct
ggtccttctggtcccaatggagctaagggtgaaaatggtgctattggcccaactggacct
ggtggagctcgtggtgctcctggtgaccgtggtgaggttggacctcctggccctgctggt
tttgctggaccccctggtgctgatggccagcctggaactaaaggagagcagggagagtca
ggtcagaaaggagatgctggatcccctggacctcaaggaccatctggagcacctggccca
gttggcccaactggtgtaactggacctaaaggagcccgtggagcacagggagccccaggt
gctactggtttcccaggcgctgctggaagagttggaccacccggccccaatggtaaccct
ggttctgctggtccagctggtcctgctggcaaagatggtcctaagggtattcgtggtgat
gctggtcccccaggaagacctggagatgctggcctccgtggacctgctggatcccctgga
gagaagggagagcctggagaggatggtccctctggtcctgatggtccttctggtcctgct
ggtcttgctggtcagcgtggtattgttggtttgcctggtcagcgtggtgagagaggtttc
cctggtcttcccggacctggtggtgagcctggtaaacagggtgcttcaggtggtgctggt
gaccgtggaccccctggacctgttggaccccctggattgactggaccagctggggaaact
ggacgtgagggtaatcctggatctgatggtcctcctggcagagatggtgctgctggtgtg
aagggtgagcgtggtaacactggtcctattggtgctcctggtgctccaggtacccctggc
tctactggtcccgctggtccagttggcaaacagggagacagaggagagaatggaccccaa
ggacctgctggagctcctggacctgctggagctagaggcatggctggaccccaaggacct
cgtggagacaagggagaggctggtgaggctggagagagaggacagaagggacacagagga
tttactggtctgcagggtcttcctggacctcctggttctactggtgaccagggtgctgct
ggaccttccggacctagtggacccaagggacctcctggacccagtgggccatttggaaag
gatggatcaaatggtatgcctggacccatcggaccccctggacctcgtggacgctctgga
gaatctggttcagctggacctcctggaaactctggaccccctggtccccctggtcctcca
ggccctggcattgacatgtctgcctttgctggacttggtcagactgagaagggcccagat
cccctgcgttacatgcgtgccgatgaggcttccagcaatctgagacagcatgatgttgaa
gttgatgccactctgaaatccatcaacagccagattgaggatatccgcagccctgatggc
tctcgcaagaaccctgctcgctcctgccgtgacctgaaactctgccaccctgactggaag
agcggtgagtactgggtggaccccaaccttggctgcgccgttgatgccatcaaggtctac
tgcaacatggagactggagagacatgcgttaatcccagcacacgcagcatcccacgcaag
aactggtggagcagcaagagcaagggtcagaagcatgtctggtttggagagagcatgaac
ggtggtttccatttcagttatggtgacaagagccagactcctcatatggcttccattcag
atgaatttcctgagactgctgtctagcgatgcctctcagaaaatcacctaccactgcaag
aacagcgtggcttacatggacgaatccactggtaacctgaagaaggcacttttgctacag
ggctccaacgatgttgaaatcagagccgagggcaacagccgattcacatacagtgtgctg
gaggatggttgtcagaaacacacaggccagtggggtaagactgtgattgagtacaaaact
cagaagacatccaggctgcccatcgtggacgttgctcccatggacatcggttcacctaac
caagaatttggagtagacattggaccagtctgcttcttgtaa
DBGET
integrated database retrieval system
