Trichomycterus rosablanca: 134318341
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Entry
134318341 CDS
T09921
Symbol
snrnp200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase isoform X1
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
trn
Trichomycterus rosablanca
Pathway
trn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134318341 (snrnp200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
trn03041
]
134318341 (snrnp200)
Enzymes [BR:
trn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
134318341 (snrnp200)
Spliceosome [BR:
trn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
134318341 (snrnp200)
Complex C
U5 SnRNP specific factors
134318341 (snrnp200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
T2SSE
PhoH
SWI2_SNF2
Terminase_6N
DrmE_N
Motif
Other DBs
NCBI-GeneID:
134318341
NCBI-ProteinID:
XP_062855275
LinkDB
All DBs
Position
7:complement(29216609..29249553)
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AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTKMGDKSQRTK
PQLLEERRAKRRKRDEDRHDINKMKGFTLLSEGIDEMVGIVYKPKTKETRETYEILLSFI
QAALGDQPRDILCGAADEVLAVLKNEKMRDKERRKEVEQLLGPADDTRYHVLVNLGKKIS
DYGGDKELQNMDDNIDETYGVNVQFESDEEEGDEDQYGEVRDEGSDDSEGEEAQVGGTLS
ANLGNAGDVMMNKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLDILKTASDDRE
CENQLVLLLGFNTFDFIKVLRQHRRMILYCTMLASAQSESEKERIISKMEADQDLSKVLY
QLQETEKEDIIREERSRRERVRKSRVDNDLESMDVSHGESVATRHLLDLEDLAFTQGSHF
MANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFAENETLVAIEKMPKYAQAAFEGFKTLN
RIQSKLFKTTMESDGNLLVCAPTGAGKTNVALMAMLREIGKHINVDGTITVDDFKIIYIA
PMRSLVQEMVGNFGKRLASYGIIVSELTGDHQLCKEEINATQIIVCTPEKWDIITRKGGE
RTYTQLVRLIIIDEIHLLHDDRGPVLESLIARTIRNVELTQEDVRLIGLSATLPNYEDVA
TCLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKVMEHAGKNQVL
VFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGF
AIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVIKGTQVYSPEKGRWT
ELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVGKLADMLN
AEVVLGNVQNAKDAVNWLGYTYLYVRMLRNPTLYGVSHEERSSDPLLERRRMDLVHTAAT
LLEKNNLVKYDKRTGSFQVTDLGRIASYFYITHDSIMTYNQLLKPTLSEIELFRVFSLSS
EFRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADMV
YVTQSAGRLMKAIFEIVLSRGWAQLTDKCLNLCKMIDKRMWQSMSPLRQFRKLPEEVIKK
IEKKSFPFERLYDLNHNEVGELIRMPKMGKTIHKYVHQFPKLDLAVHLQPITRSTLKVEL
TITPDFQWDDKVHGSSEAFWIMVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFEPL
PPQYFIRVSSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNAAFESLYQ
NMFPFFNPIQTQVFNALYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNADGRCVYITPM
EALAEQVFLDWNKKFQGILAKKVVILTGETSTDLKLLGKGDIIISTPDKWDILSRRWKQR
KNVQNVSLFIVDETHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAH
WLGCSTTATFNFHPNVRPVPLELHIQGFNMSHTQTRLLTMTKPVYHAIMKHSPSKPALVF
VPSRRQTRLTSIDILTFCASDVVPQRFLHCSEKDLTPFLEKLSDNTLKETLSNGVGYLHE
GLSATERRIVEQLFNSGAIQVMVASRSLCWGTSVSAHLVIVMDTQYYNGKIHAYVDYPIY
DVLQMVGKANRPLQDDEGCCVIMCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEIVT
KTVENKQDAVDYLTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVENTLQDLEQSKCI
SIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYKNIPIRH
HEDTLLRQLAQKVPHKLSNPKFNDPHIKTNLLLQAHLSRMQLSAELQSDTEDILSKAVRL
IQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPYFTSEHIKRCTDKNVESI
FDIMEMEDEDRTALLQLSDAQLADVARFCNRYPNIELSYEVSDKEDIKSGSPVVVQVQLE
REEEVIGPVIAPLFPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVAPVVGTH
NYTLYFMSDAYMGCDQEYKFSVDVKEADSDKDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgttactgcgcgtagcctgcagtatgaatataaagccaactcgaacttggtg
ttacaagcggaccgctcgcttattgaccgcacgcgtcgagatgaaccgaccggagaagtt
ttgtctcttgttggtaaactggagggaaccaagatgggagataaaagtcagagaacaaag
ccacagttactggaggagaggagagcaaagagaagaaagcgagatgaggacaggcatgac
attaataaaatgaaaggctttactctgctttctgagggcatagatgaaatggttggcatt
gtatacaagcccaagacaaaggagaccagagaaacatatgaaatcctactgagctttatt
caggctgcacttggagaccagcccagagacattctgtgtggagctgctgatgaagtgttg
gctgtcctgaaaaatgaaaagatgagagataaggaaagaagaaaagaggttgagcaactg
cttggtcctgctgatgatactcgctaccatgtcctagtgaacctgggcaagaaaatctca
gactatggcggtgacaaggagctccaaaatatggatgacaacatagatgaaacttatgga
gtaaatgtacaatttgaatctgatgaggaggaaggggatgaggaccagtatggagaagta
cgggacgaaggctctgatgacagtgagggtgaggaagcacaggttggaggtacactgtct
gctaatctgggaaatgcaggagatgtgatgatgaataaaaagaaagaccttcatccaaga
gatattgatgcattttggcttcagcgacaactcagtcgtttctacgatgatgcaattgtc
tctcagaagaaagctgatgaggttctggatattttaaagactgccagtgatgatagagaa
tgtgagaaccagttagtacttctgctgggttttaacacctttgattttatcaaagtctta
cgccagcacagacgcatgattctctactgcaccatgttggccagtgctcagagtgagtca
gagaaggaaaggatcatcagcaaaatggaagctgatcaggatttgtccaaagttctttac
cagcttcaggagactgaaaaagaggacataattcgagaggagagatcacgcagggaaaga
gtgagaaagtctcgagtggacaatgaccttgagtcaatggacgtgagtcatggagagtca
gtggcaacacgacatctgctagatctggaggaccttgccttcacccagggcagtcacttc
atggccaacaagcgctgtcagctgccagatggttcatttcgcaaacagaggaaaggttat
gaagaggtgcatgtgcctgcacttaagcccaagccctttgcagagaatgagacgctggta
gcaattgagaagatgccgaagtatgcccaggcagcctttgaggggttcaaaactttgaac
cgcattcagagtaagctgtttaagaccaccatggagtctgatgggaacctgttagtgtgc
gctcctactggagctggtaaaactaatgttgccctaatggccatgcttagagaaattggc
aagcatatcaacgtagatggcaccatcactgtagacgacttcaaaatcatctacatcgct
ccaatgcgttcactggtgcaggagatggtcggcaactttggaaagcgtttggccagttat
ggtatcatagtgtcagaattgactggagatcaccagctctgtaaagaggagatcaatgcc
actcagattattgtctgtacacctgaaaaatgggacatcattacccgcaagggaggggag
cggacatacactcaacttgtgcgcctcatcattattgatgagatccacttgctgcatgat
gaccgtgggccagtgttagagtctctgattgcacgcacaatccgcaacgtggagctaacg
caggaggacgtgcgtctcatcggcctcagtgctacactgcctaattatgaggatgtagcc
acatgcctgcgtgtggatcctgctaagggcctgttctacttcgacaacagtttccgccct
gtgccactagagcagacgtacgtcggaatcacagagaagaaggcgattaaacgttttcaa
atcatgaatgagattgtctatgagaaggtcatggaacatgctggaaaaaaccaggtgttg
gtgtttgtgcattcacgaaaggaaacaggaaagactgcacgagcgatcagagatatgtgt
ctggaaaaagacactttggggctgttccttcgagaaggttctgcctccactgaggtcctt
aggactgaggcggagcagtgcaagaatctggaactgaaggatcttttgccttatggattt
gccattcaccatgctggtatgactagagtggacagaacattagttgaggatttgtttgct
gatcgacacattcaggtgctggtgtcaactgccacactagcatggggagttaacctgcca
gcacacaccgttgtcatcaaaggcacacaagtatatagcccagagaaaggtagatggact
gagcttggggctctagacattttacagatgttggggcgtgcaggccgtccacagtatgac
actaaaggagagggcattctgatcacatcccatggagagctgcagtattacctgtctttg
ctcaatcagcaactgcctattgaaagtcagatggtgggcaaacttgctgacatgctaaat
gcagaggttgtactgggcaatgttcagaatgctaaagatgcagtgaactggttaggttac
acgtatttgtacgtgcggatgttacgcaaccctacgctgtatggtgtgtcgcatgaagag
cgaagctctgatcctttactggaacggcgcaggatggaccttgtgcacacagctgcaacc
ctgctggaaaaaaataacttggtcaaatatgacaagaggactgggagctttcaggttaca
gaccttggacgcattgccagttacttttacattacccacgattccataatgacctacaat
cagcttttaaagcctacattgagtgagatagagctctttagagtgttctccctttcctct
gagtttaggaacatcaccgtaagagaggaggagaaactggagcttcagaagctactggaa
agggtgcccatcccagtaaaggagagtattgaagagcccagtgctaagattaacgtactg
ctgcaggcatacatctcccagctcaaactggagggctttgctttaatggctgacatggtt
tatgtcacacagagcgctggtcggctaatgaaggcaatctttgagatcgttctgagtcga
ggctgggcacaactaacagacaagtgcctcaacctttgtaaaatgatcgacaaaagaatg
tggcagtctatgtctcccctgcgacagttccgcaaacttcctgaagaagttatcaaaaaa
attgaaaagaaaagctttccattcgaacgactttatgaccttaaccacaatgaagttggt
gagttgatccgcatgccgaaaatgggtaaaactatccataagtacgtgcatcagttccct
aagctcgacctggcggtgcacctgcagccaatcactcgctctacgcttaaagtggagctg
accatcaccccagactttcagtgggatgataaagtccatggctcatcagaagcattttgg
atcatggtggaggatgtggacagtgaagtgatcctacaccatgagtacttcctactcaaa
gccaagtacgctcaggatgagcatctggtaaccttttttgtgcctgtattcgagccattg
cctccacagtacttcatcagggtgtcctcagaccgctggttatcctgtgagacacagctg
ccagtttcgtttcgccacttgatcttgccagagaaatatcctcctccaacagagttactc
gacctgcaacctctccctgtatcggccctcagaaatgctgcctttgaaagcctctaccaa
aacatgttcccctttttcaacccaattcagactcaagtgttcaacgcattgtacaacagt
gatgacaatgtttttgtgggagcccccaccggaagtgggaaaaccatctgtgcagagttt
gccattctcaggatgctgctgcacaatgcagatggccgctgtgtctacatcacacccatg
gaagctctagctgaacaagtgtttttggattggaacaagaagtttcagggaattcttgct
aagaaggttgtcatacttactggagagaccagtactgacctgaagctactaggaaaagga
gacatcatcatcagcacaccagacaagtgggacattttgtcccgccgatggaaacagagg
aaaaatgtccaaaacgtcagtctctttattgtagatgagactcatctcattggtggagag
aatgggcctgtgttggaagtgatctgctccagaatgaggtacatctcctctcagattgag
cgtcccatccgcatcgtggctctcagctcctctttgtccaatgctaaagatgtggctcat
tggttgggttgcagcaccacagccaccttcaacttccaccccaatgtcaggcctgtgccc
cttgagctccacatccagggttttaatatgagtcacacacagacccgtctgctgactatg
actaaacctgtataccatgccatcatgaagcattctccatccaaaccagcgctggtgttt
gtgccctctcgccgtcagactcgactcacttctatcgacatactgacattctgcgcttca
gatgtggtccctcaaaggttccttcactgctctgaaaaggacctgactccatttttggag
aagctctctgataatacattaaaggaaactctgtctaatggtgtgggctacctgcatgag
ggactctcagccacagaacgcaggattgttgaacagctgtttaactctggtgcaattcaa
gtcatggtggcatctcgctctctgtgctggggaactagcgtctctgcccacttggtgatt
gtaatggacacacagtattacaatgggaaaattcatgcctatgtggactacccaatctac
gatgtgcttcagatggtagggaaggccaatcgccccttacaggatgatgagggatgctgt
gtcattatgtgccagggttctaaaaaggactttttcaagaagttcctttatgagcctcta
cctgttgaatctcacttggaccactgtctacatgaccacttcaatgctgaaattgtcact
aagacggtggagaacaagcaggatgctgtggactatctgacctggactttcctctaccgc
cgcatgacacagaaccccaattattacaacctacagggcatgtctcatcggcatctgtct
gaccacttgtcagaactggtagaaaacacactgcaggatctagagcagtccaaatgcatc
agcattgaagatgagatggatgttgccccccttaatctgggcatgattgctgcgtattac
tacattaactacaccaccattgagttgttcagtatgtctctgaatgccaagacaaagatc
cgcggtttgattgagatcatctccaatgcagctgagtacaagaacattccaatcaggcac
catgaagatacactgcttcgtcagttggcgcagaaggtgcctcacaaactaagcaacccg
aagttcaacgatccacacataaagaccaacctgctgttacaggctcatttgtctcgtatg
caactgagcgctgagctgcagtctgacactgaagatatccttagtaaggctgtgcgtctc
attcaggcatgtgtggatgtcctctctagcaatggctggctaagtcctgctctggctgct
atggagctggctcagatggtgactcaggccatgtggtctaaagactcgtacctgaaacag
ctgccttacttcacttcagagcacatcaaacgatgcactgacaagaatgtggagagtatc
tttgacattatggagatggaggatgaggaccgcactgcacttttacagctatcagatgcc
cagttggctgacgtggcacgtttctgtaaccgctaccccaacatcgagctgtcctatgaa
gtttctgacaaagaagatattaagagtggcagtcccgttgttgttcaagtgcagctagaa
agagaggaggaggttataggacctgtcattgcaccactgtttcctcagaaacgagaggag
ggctggtgggttgtgattggtgaccccaaatctaacagtctcatctccattaagagactg
actttgcagcagaaagccaaggtgaaactagactttgtggctcctgttgttggaacccat
aactatacgttgtatttcatgagtgatgcatacatgggttgtgaccaggagtacaagttc
agtgtggatgtgaaggaggctgacagtgacaaagacagcgactcagactga
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integrated database retrieval system
