Trichomycterus rosablanca: 134318342
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Entry
134318342 CDS
T09921
Symbol
gapvd1
Name
(RefSeq) GTPase-activating protein and VPS9 domain-containing protein 1
KO
K27566
GTPase-activating protein and VPS9 domain-containing protein 1
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
trn04131
]
134318342 (gapvd1)
Membrane trafficking [BR:
trn04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
134318342 (gapvd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RasGAP
VPS9
DUF5601
DUF5740
Motif
Other DBs
NCBI-GeneID:
134318342
NCBI-ProteinID:
XP_062855278
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All DBs
Position
7:29293880..29354301
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AA seq
1440 aa
AA seq
DB search
MVKPDIHTLAHHLKQERLYVTSERQLIQRLNGDVLKTAERLYRAAWIAKQQRINLDRLIL
TSADASPAECCQHAKVLENTQFADGYKLLGFQESIYGEFLGRLRDNPRLVASFVVAGERL
IQEHAQGVIHTVFTSLYGNCIMQEDESYLLQVLRYLIEFELKESDNPRRLLRRGTCAFSI
LFKLFSEGLYSAKLFLTATLHEPIMQLLVEDEDHLETDPGKLTERFTPTQQERLFGEKGT
DAYRQKVQAAVEANEAKLVALVNSFIGYLKQNTYCFPQSLRWIVSQMYKSLERVEGLEVG
EVRTMCTDLLLTCFICPSIVNPEQYGIISDAPINEVARFNLMQVGQLLQQLAMVDTDNGD
PRRKSSLSKFDKSCVAAFLDIVIGGRVVETPPMSSINLLDGLTRTVIYITHHQLFTLVDF
VHSVTTSDQLRDEDHLALETLLANLPKSCTVKSNSLELTPSNTPQLSPATTPANKKNRLS
IASRSRSRSNIAQDSEVDASLQDSQQEDIPEEVLVISLGTSPQTMPGMMPENEVLNLQLS
DGAQGDPQADVTKLHGKSDKTLRFSLCSDNLEGISEGPSNRSNSVSSLDLEGESVSELGP
GPSIGNGVEALQLLEHEHATTQDNLDDKLRKFEIRDMMGLTEDRDISETVSETWSTDVLG
SDFDPNMDEDRLQEIAGATMDNMLGSLMCFSAHGPVLLEPCGSTISETTSEAWSVEVLPS
DSETADSKQEERLQELESCSGVGSTSDDTEVREVSSRPSTPGLSIVSGISATSEDIPNKI
EDLRSECSSDFGGKDSVTSPDVDEASQGAHALPCVPVQAVSLLSMFDPLSSAEGTCIGTI
VRPKVQYTRPAHPPPDPPIQEPCVTGPSEQRPSLFNPNCQAQADLEHTKLRHSYPDRLVR
SRSTDTCTGRRPSSDPCINRRTMVEDKDQAGTFPTGISASTSKDSLKAEGEDKKDSDDEK
SDRNRPWWKKRFVPAIPKAPIAAFRKRDRIEKDDLGAERVPQGMSDEPSLLRQNCQAQAA
EDILDKYRNIKRISPEICREGESEHDSPRDEALQNISADDLTDSASQIAHSQDNKFSFSD
AKKKLRLALCSADSVVFPILPTATTRNGLPDHTDPEDNEIVCFLKVQLAEAINLQDKNQM
AQIQETMRCISRFDPRTCRKLLTAIAEDYRKRAPYIAYLTRCRQGLQTSQAHLERLLQRV
LRDKEVANRYFTTVCVRLLLEQMESKMQEFIRAFQGFTAADDKTAAVEDFLRYLYGAMAH
DAIWQYASEEQLQDAQMAIERSVMNHIFKLAFYPNQDGDILRDQVLQEHISRLSKVVTAN
HKALQISEVYLREAPWPSAQAEIRTISAYKTPRDKVQCILRMSSTIMNLLRLANEDAVPG
ADDFVPVLVFVLIRANPPCLLSTVQYINNFYASQLSGEESYLWVQFTAAVEFIKTIDDRK
NT seq
4323 nt
NT seq
+upstream
nt +downstream
nt
atggtaaagccagacattcacactctggcacaccacctgaagcaggagagattgtacgtg
acttcagaaagacagcttatccagcggctcaatggtgatgtcctgaagacagcagagagg
ctgtaccgtgcagcttggatagccaagcagcagaggataaaccttgaccgcctcatcctt
accagtgcagacgcttccccagccgaatgctgtcagcatgccaaggtgttggagaatacg
cagtttgcagatggatataagttgttgggctttcaggagagcatttatggagagtttctt
gggcggctgagggacaatccgcgactggttgcctcctttgtagttgctggggagagactt
atccaggaacatgcacaaggagtgatccacactgtttttacctctctatatggcaactgc
atcatgcaggaggatgagagctacttactacaggtcctacgttacctaattgaattcgag
cttaaggagagtgacaatcctcgtcgcctgctacgccggggcacatgtgcttttagcata
ttatttaagctcttctctgagggcctgtactcggccaaactattccttactgccacctta
cacgaacccattatgcagctcctggtagaggatgaggaccacctagagaccgacccaggc
aaactgactgagaggtttaccccgacacaacaggagcgcctttttggcgagaaaggcact
gatgcttatcgccaaaaggttcaggcagccgtggaagcaaatgaggcgaaactagtggct
cttgttaactcctttattggatacctcaagcagaacacctactgctttcctcagagctta
cgctggattgtgtctcaaatgtacaagtcgctagagcgtgtggaggggctggaggtaggt
gaggtgaggaccatgtgcacagacctactgctgacctgttttatctgcccatccattgtc
aaccctgaacagtatggaatcatctcagacgcacccatcaatgaagtcgcacgctttaat
cttatgcaggtgggtcagttactacagcaattagccatggtggatacggataatggggat
cccagacggaaaagcagtttatcaaaatttgataaaagttgtgttgctgcctttttggac
attgtgattggtggaagagttgtggagacccctccgatgtcttcaataaaccttttagat
ggacttactcgaactgtgatttatatcactcatcatcaactgtttactttggtggacttt
gtacatagtgtgactacaagtgaccagcttagagatgaagatcacttagcactggaaact
ctgctagccaatctaccaaagtcctgcacagttaagagcaacagcttagagctcacacct
tccaacacaccccagctttccccggctactacacctgccaacaagaagaaccgactatcc
atagcttcacgtagtcgctcccgctccaacatcgctcaggatagtgaggtggatgctagc
ctccaggactcccaacaggaagatatacctgaggaggtgcttgtcatttcattaggaact
tcacctcaaactatgcctggaatgatgccggagaatgaggtactgaacttgcagctgtca
gatggagcacaaggagatccccaagctgatgtgaccaaacttcatggcaaatctgacaaa
acgctgcgcttctcactttgcagtgacaatcttgaaggcatctctgaaggtccatctaac
cgctccaactctgtctcatctctggacctggagggggaatctgtgtctgaactaggccca
ggaccatccattggaaatggtgttgaagctttgcagctattagagcatgagcatgccaca
actcaagacaacctagatgataaactcagaaaatttgaaattcgggacatgatgggtctg
acagaggatcgggatatctctgaaacagtcagtgagacttggagcactgatgtccttggt
agtgattttgaccctaacatggatgaagacagactccaggagatagcaggggcaacgatg
gacaacatgctggggagcctgatgtgtttttcagcacatggccctgttcttttggaaccc
tgtggttctacaatatctgagaccacaagtgaggcttggagtgtagaagttcttcccagc
gactcagaaactgcagattcaaagcaggaggagcgcttgcaggaattagaaagctgctca
ggggtgggcagtacttctgatgacactgaagttagagaagtcagctctcgacccagcacc
ccgggcttaagcatagtctctggtattagtgcaacgtctgaagacatccccaataagatt
gaagacctgcgctcagaatgtagctctgattttggaggcaaagactctgtcaccagtcca
gatgtagatgaagcttcacaaggagcgcatgctcttccctgtgtgcctgtccaagctgtt
tctttgttgagtatgtttgatccactttcttctgcagaaggcacatgcattggcaccata
gtgcggccaaaggtccagtacaccagacctgcacaccctcccccagaccctccaattcaa
gaaccttgtgtcacaggaccttctgagcaacggccatccctctttaaccctaattgccag
gcccaggccgatttggagcatactaaactaaggcactcatacccagatcgtctggtcagg
agtcgcagcacagacacatgtacaggacgtaggcccagcagtgacccgtgtataaaccga
cgaaccatggtggaagataaggaccaagctgggacttttcctactggaattagtgcttct
acaagcaaggattcacttaaagcagagggagaagacaagaaggacagtgatgatgagaaa
tctgacagaaacagaccatggtggaagaaacgttttgttcctgctattcctaaagcacca
atcgcagcattccgaaagcgggacaggatcgaaaaggatgatctaggagcagagagggtc
ccccaaggtatgtcagatgagccttcattacttaggcagaactgtcaagctcaggcagca
gaggacatattggacaagtacaggaacataaagagaatcagtccagaaatttgcagagag
ggtgaaagtgaacatgactcccctagagatgaagctctgcaaaacatctctgcagatgac
cttacagactctgccagtcagattgcacattctcaagacaacaagttttcatttagtgat
gctaagaagaaactgcgtctggctttgtgctcagcagattccgtagtttttcctattctg
cccactgcaactacacggaatgggcttcctgaccatactgatccagaggacaacgagatt
gtgtgctttttaaaagtacaactggcagaggccattaatctgcaggataagaaccagatg
gctcagatccaggagaccatgcgctgcatcagccgctttgacccacgcacctgcagaaaa
ctgctgactgccattgctgaggactacagaaagagagctccgtacattgcgtatttgaca
agatgccgccaggggctgcagacatctcaggctcatctagagaggctcttgcagagggta
cttagagataaagaagtggccaatcgctattttaccactgtctgtgtccgactgctccta
gaacaaatggagtccaagatgcaggagtttatcagagcatttcagggctttacggcagct
gatgataagactgcagcagtggaggatttcctgcgttacctttatggtgccatggcacat
gatgccatttggcagtatgcaagtgaggagcagctacaggatgcccagatggccattgaa
cgcagcgtcatgaatcacatctttaaactggccttttaccccaaccaggatggagacatt
ttacgagaccaggtcctgcaagagcacattagtcgtctgtcaaaagtagtgactgccaac
cacaaggctctccaaatttcagaggtgtatttgagggaagcgccgtggccttctgcacag
gcagagattaggacaatcagtgcttataagactccacgggacaaagtgcagtgcatcttg
cgcatgtcctccaccattatgaatcttctccgtttggccaacgaggatgcagtgcctgga
gctgatgactttgtccctgtgcttgtttttgtccttataagggcaaatccaccatgtctt
ctgtccactgttcagtatattaataatttttatgccagccagctgagtggggaggagtcc
tatttgtgggtgcagttcacagctgctgttgaattcattaaaaccattgatgatcgcaaa
tga
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