KEGG   Trichomycterus rosablanca: 134318375
Entry
134318375         CDS       T09921                                 
Symbol
kdm5c
Name
(RefSeq) lysine-specific demethylase 5C isoform X1
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
trn  Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:trn00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:trn01009]
    134318375 (kdm5c)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:trn03036]
    134318375 (kdm5c)
Enzymes [BR:trn01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     134318375 (kdm5c)
Protein phosphatases and associated proteins [BR:trn01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     134318375 (kdm5c)
Chromosome and associated proteins [BR:trn03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    134318375 (kdm5c)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel ARID JmjN zf-C5HC2 PHD BREX_BrxC_helical zf-PHD-like DUF6827
Other DBs
NCBI-GeneID: 134318375
NCBI-ProteinID: XP_062855326
LinkDB
Position
7:complement(33770837..33802502)
AA seq 1564 aa
MEGGDEFIPPPECPVFEPSWEEFADPLGYIAKIRPIAEKSGICKIRPPPDWQPPFAVEVD
NFHFTPRIQRLNELEAETRVKLNYLDRIAKFWEIQGSSLKLPNLERRILDLFSLSKIVTE
EGGFETVCKERRWARVAQRLGYPPGKNIGSLLRSHYERIVSPFEMFQSGASLLPCKPKPY
ESDDVDKEYKPHSIPLRQSVQPPKINNYGRRAKRLQSEGPEDPSHQPLATGSQHTSPEPT
EEDIEKNPELKKLQIYGAGPKMMGLGLVARDKARKKDELPQTVIVKDNSGVKEESGEMLI
TKSDPDIPPPPPNLIIKSEVKKKEEEELSPIKPNDSSTNEPCTKMTMRLRRNLNNPQFVD
SFVCRMCGRGDNDEKLLLCDGCDDNYHTFCLLPPLTDPPKGNWRCPKCVAEECKKPTEAF
GFEQATREYTLQSFGEMADAFKADYFNMPVHMVPTELVEREFWRLVSSIEEDVTVEYGAD
IHSKDFGSGFPVNNGKKHLTEEEEAYAHSGWNLNVLPVLEQSVLCHINADISGMKVPWLY
VGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPAIAAEKLEEVMKKLTPELFEFQPDL
LHQLVTIMNPNILMAHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWL
PTGRSCIEHYRRLRRYCVFSHEELTCKMAACPEKLDLNLAAATHREMFIFVQEERKLRKA
LLEKGITEAEREAFELLPDDERQCDKCKTTCFLSALACTNCPEHLVCLYHTQDLCSCSTE
KLYLRYRYTLDELLAMLHRLKVRAESFDSWANRVKEALEQEEGNKIGIKNLEELKEEAVE
RKFPDNELLQRLTSVLADAQKCQSTSTELINGNQKAKMSLQELQTLVETMQNLPCVIEQL
TEVQAVLQKMEEFESRAQVVLSSNAGEWKHSSPAPSKEEVQTLLEEGLALPVVVPSCQHL
SGLQEQRRWLEQVRRTMKTGGGDVTLAVLRNLMEVGCSIPQSVSVETAMAELQELLTIAE
RWEEKAQICLEHRQKHPLSTLEAIVNEAQLIPVQLPNILALQACLSRARAWVTDLEEIQQ
NGEHYPCLDDLEGLVAIGRDLPVWMEELRQLELQVASAHSWREKASKTFLKKSSQHSLLE
VLCPCVEKRKKKEEDSSSEADTDVNVLGLTAQDLRDPGAIVMAFKEGERQEKAALQRLRQ
LNLEKPGVDSTNKDVKKEQRWSDSMDTDTSLPLEKVPHQNGGTSPSHKGSQSVCVCGGQP
NSLLHRCHLCRDWFHGSCVPFPSLLGPADVPLVNPLCWWDWDTRFLCPRCQRTRRPRLET
ILALLVALQKLPVRLPEGEALQCLTERAINWQGRAKQVLDTPEVQKALERLQELKTNLSR
EKTEQEEKKGNVEDVIVLSDSEEQDDGVIDLTEESNSKKSNGGNAANGIQSGCENSIESV
TGVESLAPVVPQLKGCVIELAPSTRAQLEELQLEGDLLEVTLDQTQTIYRLLQAASLPPQ
QALHTLIQIELQEQTRSGRSSRTKDSKRKRKGQKEGGAKCTEPSESKKTRPVNHMPVQLE
QEVL
NT seq 4695 nt   +upstreamnt  +downstreamnt
atggagggaggagatgaatttattccacctccagaatgtccagtgtttgagccgtcatgg
gaggagtttgcagatccgctcggttatattgccaagattcgtccaattgcagaaaagtct
ggaatatgcaagattcgccctccaccagactggcagccaccctttgctgtagaggtggac
aatttccattttacaccgcgtatacagagactaaatgaactagaggcggagacaagagtt
aagctgaattatctggacagaatcgccaagttctgggagatccagggatcctcactcaaa
cttcccaacttggagcgccgcattctagatctgttcagcttgtccaagatcgttacagaa
gaggggggcttcgagacggtgtgcaaggagaggcgatgggcacgggtggctcagagactc
ggctacccaccgggcaaaaacattggatctctgctaaggtcacactatgagaggattgtc
tctcctttcgagatgttccagtctggtgccagcttactgccatgtaagcccaagccatac
gagagtgacgatgtggacaaggagtacaaaccacactccattcctctacgacagtcagtc
cagccacccaagatcaacaattatggacgaagagccaaacgtctgcagtctgagggtcca
gaggatccgagccatcaacctctagccactggctctcaacatacttcgcctgaacccact
gaggaagacattgagaagaaccctgagctaaaaaagttgcaaatctatggcgccggaccc
aaaatgatgggccttggcttagtggcgcgagataaggctaggaagaaagacgaacttcct
cagactgtgatagttaaagacaacagcggtgttaaagaagaatccggggagatgttaatc
acaaagtcagacccagacatccctcctccgcccccaaacctcattataaagagcgaagtg
aagaaaaaggaggaggaggagctcagtccaattaagcccaacgattctagtacaaacgaa
ccctgcaccaagatgaccatgaggcttcggcgaaacctcaacaacccgcagtttgtggac
tcatttgtgtgccgcatgtgtggccgtggggacaacgatgagaagctgctgctgtgtgat
ggttgcgatgataattaccacactttctgcctactgcccccactcacagacccacccaag
ggcaattggcgctgtcccaaatgtgtggcagaggagtgtaagaaacccacagaagcgttc
ggttttgagcaggccacgcgagaatacacattgcagagttttggcgagatggctgacgcg
tttaaggctgattacttcaacatgccagttcatatggtgccgacagagctggttgaaagg
gagttttggcggttggttagtagtattgaggaggacgtgactgtagaatatggagcggac
attcactcaaaagactttggcagcggctttcctgtcaacaacggcaagaaacatttgaca
gaggaagaagaggcatatgcacacagtggctggaatctgaatgtgctgccagtgttggag
cagtcggtattgtgccatatcaatgccgacatctcaggtatgaaggtgccgtggttgtat
gtgggcatggtgttctcagccttctgctggcacattgaggaccactggagctactccatt
aactacttacactggggggagcccaaaacatggtatggtgttccagcaatagcagcagaa
aagctggaggaagtcatgaaaaagctcactcctgaactgtttgagttccagccagacctg
ctccatcaacttgtaacaatcatgaaccctaatatactcatggctcatggagtaccggtt
gtgcgtaccaatcagtgtgcaggagagttcgtcatcacgtttcctcgagcctatcacagt
ggatttaatcagggatataactttgctgaagctgtcaacttttgcactgcagactggctg
cccacagggcgctcctgtatcgagcattaccgtcgtcttaggcgttactgcgtattctct
catgaggagctcacgtgcaaaatggctgcttgcccggagaagctggacttaaacctggct
gctgccacacatcgggaaatgtttatttttgtacaagaggaaaggaaactgcgcaaggct
ctgctggagaagggtataaccgaggcagaacgggaggcgtttgaattgttaccggatgat
gagaggcagtgtgacaagtgcaagaccacctgctttctctctgccctggcctgcaccaac
tgccccgagcacctggtctgcctctaccacacacaagacctctgctcctgctccacagag
aaactctacctcaggtatcgctatactttagacgagctgttggccatgctgcaccggctg
aaagttcgggctgagtcttttgactcctgggctaacagagtgaaagaagccctagagcaa
gaagagggcaacaaaataggcattaaaaatttggaggaactgaaagaggaggcagtggag
cgcaagtttccagacaacgagctgctccagagattaacatctgtactggctgacgcccag
aagtgtcagagcacaagtacagagcttattaatggcaaccagaaggccaagatgagtctg
caggaacttcagacacttgtggaaaccatgcaaaaccttccttgtgtcatagaacagctg
actgaagtgcaggctgttctacaaaagatggaagagttcgaatcacgtgcccaggttgtc
ctaagcagcaatgctggcgagtggaaacattcctcccctgctccatcgaaagaggaggtc
cagactctgctggaggagggacttgctctgccggtcgtggttccatcgtgtcagcacctg
tcgggtctgcaggagcaaagacgctggctggagcaggtgcgccggacgatgaaaaccgga
ggtggcgatgtcactttggccgtgctgagaaacctgatggaggtcggctgcagcattcca
cagagcgtcagcgtcgagacggcgatggcagagctgcaggagctgttgaccattgctgag
cgctgggaggaaaaggctcaaatctgcctcgagcacaggcagaagcatcctctctccacg
ctggaggctatagttaacgaagcccagctgattccggtgcagttgcccaacatcctggcc
ctgcaggcttgcctaagtcgtgcccgtgcttgggtcactgacctagaggagatacagcag
aacggagagcactacccatgtcttgacgatcttgagggtctggtggcaatcggccgcgac
ctgcccgtgtggatggaggagctgcggcagcttgagctacaggtggccagcgctcactcc
tggagagagaaggccagcaagaccttcctaaagaagtccagtcagcacagcctgctggag
gttttgtgtccatgtgtggagaagagaaagaagaaggaggaggattcaagttcagaagca
gacactgatgttaatgttttgggtctcactgctcaggacctcagagacccaggagcaatt
gtgatggcgtttaaagagggagagcggcaggagaaagcggctctccagcgtctacggcag
ctgaacctggaaaagcccggtgtggacagcaccaacaaggacgttaaaaaagagcagcgg
tggagtgactcaatggacacggacacgtcgctgcccttagaaaaagtcccacaccagaat
ggcggcacctccccttctcacaaaggcagccaatcggtgtgcgtgtgtggtggccagcct
aactccctgctccaccgctgccatctgtgcagagactggttccacgggagctgcgtgccc
tttccgtcgctgctcggccctgctgacgtaccgctcgtcaacccgctctgttggtgggac
tgggacacgcgttttctgtgcccgcggtgtcagcggacccggcgcccacggcttgaaacc
attctagcattgctggtcgcgctgcagaagctgcctgtccggctcccggaaggcgaggcg
ctgcagtgtctcactgaaagagccatcaattggcaggggcgggccaaacaggtcctggac
actccagaagtgcagaaggccctggagaggctgcaagaactgaaaacaaatttaagcagg
gagaagaccgagcaggaggaaaagaaaggaaacgtggaggatgtaatcgtgttgtcggac
tctgaggagcaggatgatggagtgatcgatctgactgaggagagcaactcgaagaagagt
aacggcgggaacgctgctaatggcatacagtcgggctgtgaaaatagcattgaaagtgta
acaggtgtggagtctctagcaccagtggttccacaacttaaggggtgtgtaatagaactg
gccccttcaaccagagctcagttagaagagctgcagctagagggagacctgctagaggtt
actctcgaccaaacacaaaccatctaccgactcctgcaggctgcttctctaccaccacaa
caggctttacacacactcatacagatcgagctgcaggagcagacgcgctcaggtcgcagc
agcaggacgaaagattccaaaagaaagaggaaaggtcaaaaagagggcggagccaagtgt
accgagccctcggagtccaagaaaacccgacctgttaaccacatgcctgtacagcttgag
caagaggttttgtga

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