Trichomycterus rosablanca: 134318594
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Entry
134318594 CDS
T09921
Symbol
lsm1
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
trn
Trichomycterus rosablanca
Pathway
trn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134318594 (lsm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trn03019
]
134318594 (lsm1)
Messenger RNA biogenesis [BR:
trn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
134318594 (lsm1)
mRNA degradation factors
5'-3' decay
Lsm complex
134318594 (lsm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
134318594
NCBI-ProteinID:
XP_062855665
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All DBs
Position
7:complement(39257260..39260577)
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AA seq
133 aa
AA seq
DB search
MNYMPGTASLIEDIDKKHLVLLRDGRTLIGILRSIDQFANLVLHQTVERIHVGKKFGDIP
RGIFVVRGENVVLLGEVDLDKDCDQILQRVSIEEILEEQRVEQQAKQESERLKLQAVKER
GLSLPKADTLDDF
NT seq
402 nt
NT seq
+upstream
nt +downstream
nt
atgaattacatgccgggaacagcgagtctgattgaggatatcgacaaaaagcacctcgtt
ctgctccgagatggaagaactctgatcgggatcctcagaagtattgatcagttcgctaat
ctggtgctgcaccagacggtggaaaggatccacgtgggcaaaaaattcggagacattcct
cgagggatcttcgtcgtccgaggggaaaacgtggtcctactgggagaagtagatctggat
aaggactgtgatcagatcctgcagagagtttccatcgaggagatcctggaggagcagcgg
gtcgagcagcaagccaagcaggagtcggagaggctgaaactgcaggccgtgaaggagcga
ggtctctccctgcctaaagcggacacgttagatgatttctga
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