Trichomycterus rosablanca: 134318812
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Entry
134318812 CDS
T09921
Symbol
nxf1a
Name
(RefSeq) nuclear RNA export factor 1 isoform X1
KO
K14284
nuclear RNA export factor
Organism
trn
Trichomycterus rosablanca
Pathway
trn03008
Ribosome biogenesis in eukaryotes
trn03013
Nucleocytoplasmic transport
trn03015
mRNA surveillance pathway
trn05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
134318812 (nxf1a)
03015 mRNA surveillance pathway
134318812 (nxf1a)
03008 Ribosome biogenesis in eukaryotes
134318812 (nxf1a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
134318812 (nxf1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trn03019
]
134318812 (nxf1a)
03009 Ribosome biogenesis [BR:
trn03009
]
134318812 (nxf1a)
Messenger RNA biogenesis [BR:
trn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
134318812 (nxf1a)
mRNA cycle factors
Stress granule specific factors
134318812 (nxf1a)
Ribosome biogenesis [BR:
trn03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
134318812 (nxf1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_9
LRR_4
LRR_8
UBA_8
UBA_4
Motif
Other DBs
NCBI-GeneID:
134318812
NCBI-ProteinID:
XP_062855819
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All DBs
Position
8:complement(5177015..5190303)
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AA seq
648 aa
AA seq
DB search
MPRNRRRYQNLVVKSVNCGGLDEEPVREVWSNDTGEHDDRLGSHQFRQRKVRGPFRGCLD
RNVEVPSLKLGPAGDAWPWPPGRCLEKDGGAMSNGQDKATQQRFNPYGRPNRAGPGQFGR
DRKRGGGMGNHRLSEVDQAGEDTERGGPISGEAKSWYKITIPYGRKYNKNWLLSALQNHC
PIPFTPVNYFTEGQKVQFYLEDATAASALCKVSRRITDNEGYKVVVIMNPCVPPSFTKID
LKEEDLQHLKKFMSERFDGSVQLLNLQSICTDQALVSRKIKVILNRRSCMQAVIKIIKEN
ISDLKSLNLSNNRLYKLDDLAELVDVAPNLTMLNLSDNELKSERELDKVKGFRLTELWLN
HNPLCDHFKDKATYISAVQQRFPRLLKLDGHSLPAPIGFDLETRAMIPPSKGSYFGTDEI
KEFIMRFLQQYYSVYDSGDRQLLLEAYHDGACFSISLPSRSTLDNYQIHSRNFKKVKDSV
MRLRLLKHTRLNVVAFLNQLPKTQHDLASFCIDVNTYTQTLLAFTVSGVFKEVDTKPRDL
VRAFSRVFVAVPASNSGLCLVNDELFVRNANSDEVRRAFTAPTPSSSPELTLTTLQKEML
SEFSQKSQMNLEWSQRCLQHSEWDFNRAVQLFTELKAQGSIPDVAFIS
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgccgaggaaccgcaggaggtaccaaaatctggtggttaaaagtgtaaactgtggaggt
ttggatgaagaacctgttagagaggtgtggagtaatgacacgggagaacacgatgatcgc
ttggggagccaccagttccgtcaacgcaaagtccgtggtccattcagggggtgcttggac
agaaatgtagaagttccgagcctaaaactgggtcctgcaggagacgcctggccttggccc
cctggtaggtgtctagagaaagacggaggtgccatgagcaatggccaggacaaggccact
cagcagagattcaacccgtatggccgacctaaccgagcaggacctggccaatttggtaga
gacagaaaaagaggagggggcatgggaaatcacaggctgagtgaagtagatcaagcggga
gaagatacagaaagaggaggacctatttcaggagaagccaaaagttggtacaaaattacg
attccctatgggaggaaatacaataaaaactggcttttgtcagcactgcagaatcactgc
cccatacctttcactccagtaaattacttcacagaagggcagaaagtgcagttctacctg
gaagatgccaccgctgccagtgccctgtgcaaagtcagtcgcaggattacagataatgaa
ggatataaggtggttgtgatcatgaacccatgtgtgccaccatccttcacaaagattgac
cttaaagaagaggatctgcagcacttaaaaaaatttatgtccgagcgctttgatggctct
gtgcagcttctcaacctgcaaagcatttgcactgatcaagctttggtgtctcgaaagatc
aaggtcattctgaacagaaggagctgcatgcaggctgtgataaagatcattaaagagaat
atctcagatttgaagtctctaaacttaagcaacaataggctgtacaagttggacgatctt
gcagagctggtggatgttgcacccaacttaacaatgctcaacctctctgataatgagcta
aagtctgaacgagagctggacaaggtgaagggctttaggcttacagagctttggctgaat
cacaaccccctatgtgatcacttcaaggacaaggccacatacatcagtgctgttcagcaa
cgattccccagacttctcaaactggatggccacagtcttcctgcaccaataggttttgat
cttgaaacccgtgccatgattcctccctccaagggcagctactttggtacggatgaaatt
aaggaattcatcatgcgtttcctgcaacaatattacagtgtatacgactcaggagatcga
cagcttctgctggaagcctatcacgatggagcctgcttctccatcagcctcccctctagg
tctactctggacaattatcaaattcacagccgcaactttaagaaggtcaaagactctgtg
atgcgcctccggctgttaaagcacactcgcctgaatgtcgtcgcttttcttaatcaactg
ccgaaaactcagcatgacttggcctctttttgtatcgatgtaaacacttacacacaaacg
ttactggcatttacggtcagtggggtgtttaaagaagtcgataccaagcccagagacctt
gttcgtgccttctctcgagtctttgttgctgttccagcctcgaattctggactgtgttta
gtcaatgatgagctgtttgtgagaaatgctaacagcgatgaggtacgtcgtgcgtttacc
gccccgactccgtccagcagccctgaactcacacttaccactttacagaaggaaatgctc
tcagaattctcccagaaatctcaaatgaatcttgagtggtcccaaaggtgcttacaacat
agtgaatgggacttcaaccgagctgttcagctgtttacagagctcaaggcccagggctcc
ataccagacgttgccttcatatcctga
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