Trichomycterus rosablanca: 134319061
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Entry
134319061 CDS
T09921
Symbol
edc3
Name
(RefSeq) enhancer of mRNA-decapping protein 3
KO
K12615
enhancer of mRNA-decapping protein 3
Organism
trn
Trichomycterus rosablanca
Pathway
trn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134319061 (edc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trn03019
]
134319061 (edc3)
Messenger RNA biogenesis [BR:
trn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
134319061 (edc3)
mRNA degradation factors
5'-3' decay
Decapping complex
134319061 (edc3)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Edc3_linker
YjeF_N
FDF
LSM14
DUF5096
MdcG_N
Motif
Other DBs
NCBI-GeneID:
134319061
NCBI-ProteinID:
XP_062856119
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Position
8:complement(31461247..31467402)
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AA seq
504 aa
AA seq
DB search
MAADWLGSLVSINCGPTLGVYQGEVFSVDQTSQTISLRQPFHNGMKCPVPEVTFSAMDIK
ELKILEIRHCSNGVAKQSGPNMTVTAAGYTGRKDKGGGCGVTSTQVSSVPVSVPKAEPRT
RDGGMSPSQHYSKSYVERQVDMTGQSKGFRRRHNSWSSSSRGPNQATPKKNGSKNGQMKN
KDDECFGDCMDEFLDEDFDFEGNLALFDKAAVFSQIDSSDRRGNSARTRGNPAEQTPSRY
RHDENILEGKPVVYRQIIVPQSGIKEYSTDSGLVVPSISNEFHKRLLCVAESYGLSLERR
LEMTGVCASQMALTLLGGPNRLTPKNLHQRPTVALLCGPHVQGAQGISCGRHLANHEVEV
ILFLPNFVKMLEAINSELTLFGKTGGKQVSSVKDLPDTPVDLVINCLDSHENTFLREQPW
YRAAADWANQNRAPVLSIDPPVCGQEQAVEAKWSLCLGLPLPLPERAGRVYLCDIGVPRQ
VFQEVGIKYHSPFGCKFVIPLHST
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgactggttgggcagtcttgtttcaatcaactgtggtccaactttgggagtg
taccaaggagaagtgttctctgtggatcagaccagtcaaaccatctccctcagacagccc
tttcacaatggaatgaaatgtccagtgcctgaggtcactttcagtgctatggacatcaag
gagctcaaaatactggaaattcggcactgctcaaatggagtcgctaagcagagtggtcct
aatatgaccgttaccgcagctggatacactggaagaaaagacaaaggtggaggttgtgga
gttaccagcactcaggttagcagtgttcctgtgtctgtgcccaaggctgagcccaggact
cgcgatggaggcatgtctccttcacagcactactcaaagagctatgtagagcgccaagta
gatatgactggtcagagtaaaggcttcagacgaagacacaactcctggtcatccagcagt
aggggtccaaatcaggccaccccaaagaagaatgggtcaaagaatggccagatgaagaat
aaagatgatgaatgttttggagactgcatggatgagtttctagatgaggactttgacttt
gaggggaacttggctctttttgacaaagcagcggttttctcgcagattgactcgtcagat
cgacggggcaacagtgcacggacacgggggaatcctgcagagcagactccctcacgctac
cgccatgacgagaacattttggaaggaaagccagttgtctacagacagatcatagtgcct
caatcagggataaaagaatatagcactgattcaggtctggtggtccccagtatttcaaac
gagtttcacaagcgcttactgtgcgtggctgagagttacggtctctctctggaacgcagg
ctagagatgaccggtgtgtgcgctagtcaaatggctctcacattgcttggaggcccaaac
aggcttacccctaaaaatctgcaccagcggccaacagttgcattactgtgtgggccacat
gtacaaggagctcagggaatcagctgtggtcggcatctggccaaccatgaagtggaggtc
atcctctttctccctaactttgtgaagatgttggaagccatcaacagtgaacttacactg
tttggcaaaactggcggcaaacaggtttccagtgtcaaagatttgccagataccccagtg
gacctagtcataaactgcctggactctcacgagaacaccttcctgagggaacagccatgg
taccgggctgcagctgactgggccaatcaaaaccgggccccagtgctcagtatagatcct
cctgtatgtgggcaagagcaggctgtggaggctaagtggtccctctgcctgggccttcca
cttccactgcctgaaagagcaggcagagtgtacctgtgtgacataggtgtgccacgccaa
gtgtttcaggaagtgggcattaagtaccactcaccctttggctgcaagtttgtcatcccg
ctacactcaacataa
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