Trichomycterus rosablanca: 134319183
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Entry
134319183 CDS
T09921
Symbol
clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
trn
Trichomycterus rosablanca
Pathway
trn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
134319183 (clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trn03019
]
134319183 (clp1)
Enzymes [BR:
trn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
134319183 (clp1)
Messenger RNA biogenesis [BR:
trn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
134319183 (clp1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
ATP_bind_1
MMR_HSR1
AAA_16
TniB
AAA_18
CbiA
AAA_22
nSTAND3
EAD7
GTP_EFTU
ABC_tran
Motif
Other DBs
NCBI-GeneID:
134319183
NCBI-ProteinID:
XP_062856284
LinkDB
All DBs
Position
8:41540093..41544601
Genome browser
AA seq
445 aa
AA seq
DB search
MSTEAPEKAGEDGTGPGGAAGGGGGTRFDLEKETELRFEVEAGERVQLELLSGLAEVFGS
ELNRNKKYTFGAGSKIAVFTWQGCSLSLSGKTEVAYVSKDTPMLLYINTHAALEQMRRQA
ERENERGPRVMVVGPTDVGKSTLCRLLLNYAVRLGRRPTLVELDVGQNSVSVPGTMSALY
IERPADVEEGFSVQAPLVFHFGSTTPGTNIKLYNKLTSCLAEVFSQRCEVNRRASVGGCI
INTCGWVKGSGYQALVHCASAYQVDVVLVLDQERLYNELKRDLPHFVRVVLLPKSGGVVE
RSKDCRRETRDDKIREYFYGFRGNSFYPHAYDVRFSDVRIYKIGAPSIPDSCLPLGMSQD
DTQLKLVPVSPGRDLTHHVLSVSCVEDEVEEGAVRRGILESPVCGFIVVTAVDTQAQVMT
VLSPAPRPLPRHTLLIMDIRFIDLK
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgagcactgaagcgccggagaaagcgggtgaggatggaaccggccccggcggagctgcc
ggcggcggcggtggtacccgcttcgatctggagaaggagacggagctgcgcttcgaggtg
gaggcgggagagcgggtgcagctggaactcctgtcgggtctggccgaggtgttcggatcc
gaactgaaccggaataagaagtacacgttcggagccgggtccaagatcgccgtgtttacg
tggcaggggtgcagcctgtcgctctcgggcaagacggaggtggcgtacgtctccaaggac
acgcccatgctgctgtacataaacacacacgccgcgctggagcagatgaggcgacaggcc
gagcgggagaacgagcgcggacctcgggtcatggtggtgggaccgaccgacgtcgggaaa
tccacgctgtgtcggctgctgttgaactacgcggtgaggttgggcaggagacccacgctg
gtggagctggacgtcggacaaaacagcgtgtccgttcccgggacgatgtcggcgctttac
atcgagcgtccagcagacgtggaggagggtttctcagtgcaggcgcctctggtcttccac
ttcggatcgaccacgcccgggaccaacatcaaactctacaacaagctgacgtcgtgcctg
gcggaggtgttctctcagcgctgcgaggtgaaccggcgcgccagcgtgggcggctgcatc
atcaacacctgcggctgggtgaagggctcggggtaccaggcgctggtccactgcgcctcg
gcctaccaggtggacgtggtgctggtgctggaccaggagcggctctacaacgagctgaag
cgcgacctgccgcacttcgtccgcgtggtcctgctgcccaagtccggcggcgtggtcgag
cgctccaaggactgccggcgcgagacgcgcgacgacaagatccgcgaatacttctacggt
ttccgtggcaactccttctacccgcacgcgtacgacgtgcgcttctcggacgtccggatc
tacaagatcggcgcgccgtccatcccggactcgtgcctgccgctgggcatgtcgcaggac
gacacgcagctgaagctggtgcccgtcagccccgggcgcgacctgacccaccacgtgctg
agcgtcagctgcgtggaggacgaggtggaggagggcgcggtccgcagggggattttggag
agtccggtgtgtgggttcatcgtggtcacggccgtggacacccaggctcaggtgatgacc
gtgctgtcccccgccccgagacctctcccccggcacacgctcctcatcatggacatccgc
ttcatcgatctgaaataa
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