Trichomycterus rosablanca: 134319380
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Entry
134319380 CDS
T09921
Symbol
pcdh1b
Name
(RefSeq) protocadherin-1
KO
K16498
protocadherin delta 1
Organism
trn
Trichomycterus rosablanca
Pathway
trn03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
134319380 (pcdh1b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
trn01009
]
134319380 (pcdh1b)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
trn04515
]
134319380 (pcdh1b)
Protein phosphatases and associated proteins [BR:
trn01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
134319380 (pcdh1b)
Cell adhesion molecules [BR:
trn04515
]
Cadherins
Protocadherins
134319380 (pcdh1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
TMEM154
EphA2_TM
Motif
Other DBs
NCBI-GeneID:
134319380
NCBI-ProteinID:
XP_062856599
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All DBs
Position
8:16419205..16518010
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AA seq
1193 aa
AA seq
DB search
MCHMVMASVMADWMSLLLLFFFTPSYATITYRLREEQPPNTLVGSLASDQGLPDSGHLYK
LEVGAPYLIVDGKTGDIFTTEVPIDRETLKDCQNLFEGDPCFLEFEVSITDLIKGSGPRL
IEGRIEIEDENDNTPQFSSPVLSLSIPENTHVGALFAIPVATDKDAGSNGIADYSLTSPD
VTELFSLQVAGNADEKVPQLIVLDSLDREQRDSYDLNIKVMDGGHPPRYSSALLRITITD
TNDNVPKFERSHYDGELAENSPVGSTVLQVKANDADTGENGEVTFNFYQPPNIVQRLLNI
NRNTGTIYVKSPADREEGSLLKFYVQAKDNGLQAKSSKALVTITVKDKNDNAPSIGIRGF
ALVAHEDGIANISEDMPVGTPVALVEVTDRDEGQNAVVTCVVAGDVPFQLQSASDTGSRR
KYFLLTTTPLDFEQVKEYRIDIIAVDSGNPALSSTNSLKVQVTDVNDNSPVFSSSQYEVD
FSEDNQPGDKVLHVVATDADSGTNAELTYKIIVDSDIKGLFKINPNTGEIQVMNQLDREH
RECYKFLVEAMDKGGPSMMGTATVVINVLDRNDNDPKFMLNTYTFSVLENLPPLSAVGMV
TVTDVDKGENAQVYLSVEPDNGRFLIQNGTFTILSSISFDREKENTYTFRLKAVDGGDPP
RSSYVGISINVLDVNDNAPYVTKPSNSSYKFLSPLTSPKTHVEKVEAEDIDTGLNADLEF
SIMGGNPYGLFHISSTGEITLTEELSRKHNGLHRLVIRVNDMGNPRKHTTALVHIFVNET
VGNVTLVESLIGHSLYTPLETDIAGDPDYVYGQQSNIFFGSIAGIAVVILVIVVVVVIRH
HLQKKAKSGYQPGKKESKDFYTPKQENKICKSKRCKKNKSPKPALEEDEDESLQKGLKFN
SMSDSDSPRIHLSLNYPPGSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQAVQDLPATNT
FVATGDTNSTGSDQYLDYSYKTQPHKYTAKQLPHRRVTFSTTNPSQDLQDSSLHSFYDSG
LDESETQSSKGSSGPRIVPLPLPEDHYERTTPDGSIGEIEHPENDLRSLPDVAMTGNCTH
ECTEFGHSDSCWMPSPNRNSKLTRSGSKLSTFVPYHEWEPQQPVIGNGSPKPMREELGGE
ASKLSGICFMTLYTSAYSAGGEGVKDGAMEETPLSQTAVTFSSRQGSKKEIYL
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgtgccacatggtgatggcgtcagttatggctgattggatgtcgcttctcttattattt
tttttcacaccctcctatgccactataacatatcgcttacgggaggagcaaccaccaaac
acactggtggggagtttagcatcagatcagggacttcctgattcaggtcacttgtacaaa
ctcgaggttggtgccccctaccttattgtggatggaaaaacaggtgatatctttacaaca
gaagttcctattgaccgtgaaacactgaaagactgtcaaaatctgtttgagggtgatccc
tgctttctggaatttgaagtttctatcacagacttgattaaaggttctggacctcgactg
attgagggccgaattgagatcgaggatgagaatgacaatacacctcaattctcatcaccc
gttttgtcattatcaattcctgaaaacactcatgtcggagcactgtttgcaattccagta
gctactgataaagatgcaggaagtaatggtattgcagattattcactgactagcccagat
gtcacagaactgttcagtctccaggtggcaggaaatgcagatgagaaagtgccacaacta
attgttttagacagtctggaccgtgagcaacgtgattcatatgatctcaacatcaaagtc
atggatggtggccatccaccacggtacagcagtgctttactgagaatcaccattacagac
accaatgacaatgtgcctaaatttgagcgttcacactacgatggagaacttgctgaaaat
agtcctgttggttctacagtcctgcaggtaaaagctaatgatgctgacacaggggaaaat
ggagaagtcacattcaacttctaccagccaccaaacattgtgcagcgcctgcttaacata
aaccgaaatactggcaccatctatgtcaaaagtccagcagatcgtgaagaaggaagtctg
ctgaaattttatgtacaggccaaagacaatggcttacaagccaagagttccaaagctctg
gtgacaattactgtgaaggacaagaatgacaatgctccatcaatcgggatccgaggattt
gctctggtggctcatgaggatggcattgccaacatttctgaggatatgcctgttggtacc
ccggtagctctggtggaagtgacagatcgagatgagggccaaaatgcggtggtgacttgt
gtagtagcaggagatgtaccttttcagctacagtcagcctcagacacaggaagtagaagg
aagtacttccttctgaccaccacaccattggattttgagcaggtcaaagaatacagaatt
gacattatagctgttgattcaggaaacccagctctttccagcaccaactcactaaaagtc
caagtaacagatgtaaatgacaactctccagttttttcttcatcacagtatgaagtagac
ttttcagaagacaaccagccaggtgataaagttttgcatgtagtagccacagatgctgat
agtgggaccaacgctgagttgacatacaaaataattgtagactcagacatcaaggggctt
ttcaaaattaatcctaacacaggagaaatccaagtgatgaatcaactggaccgtgagcac
agagaatgctacaagtttcttgttgaggcaatggataaagggggtcccagtatgatggga
acagcaacagttgtaattaatgtacttgaccgcaatgacaatgatcctaaattcatgcta
aacacttacactttttcagttctggagaatctgccccctcttagtgcagtggggatggtg
actgtcacagatgttgacaagggcgaaaatgcccaggtttacctatcagtagaaccagac
aatggaaggtttttaattcagaatggaacattcaccatcctttcaagcatttcttttgat
cgggaaaaggaaaacacatacacatttcgactaaaagctgttgatggaggtgaccctcct
cgctcttcctatgtgggaatttcaataaatgtcctcgatgtaaatgacaatgctccatat
gttaccaaaccctctaactcatcgtacaagttcttgtcaccactaacaagtccaaaaaca
catgtggaaaaggtggaagcagaggacattgatactggattgaatgcagatcttgaattc
agcatcatgggtggaaacccttatggactttttcatatttcatccacaggagagattact
cttaccgaagaattgagcaggaagcacaatggccttcaccgcctggtcataagagttaat
gatatggggaaccctcgcaagcataccactgcactggtccacatctttgtaaatgaaacc
gtcggtaatgtgacactggtggagtctctgattggccacagcctctacactccattagag
actgacattgctggagatccagactacgtgtatggccagcagagcaacattttctttgga
agcattgcaggaattgctgtagtcatcctagttattgtggtggttgttgtcatcaggcac
catttgcagaagaaggccaaaagtggatatcaacctggaaaaaaagagtccaaagatttt
tacacgcccaagcaagaaaataaaatttgcaagtctaaaaggtgcaaaaagaacaagtct
ccaaaaccagcactggaggaggatgaagatgaaagtcttcagaaaggcttgaaatttaac
tcgatgagtgacagcgacagtcccagaatccatctatcactcaattaccccccaggaagc
cctgatttgggccgccactaccgttccaactcaccccttccttctattcagttgcagccg
caatccccctctgcttcaaagaagcatcaggctgttcaggaccttccggccactaacacc
tttgtagcgaccggggacaccaactcaactggttcggaccagtatttggattacagctac
aagacccaaccacacaaatacactgccaaacagctgccacatcgtcgtgtgaccttctca
acaaccaatccatcacaggatctgcaggactcctcccttcacagtttctatgacagtggc
cttgatgaatcagaaacacagagcagcaaaggttcctcaggaccaagaattgtgccatta
ccactgcctgaggatcactatgagagaacaactccagatggcagcataggggagatagaa
caccctgaaaatgacctaagatcacttccagatgtggcaatgactgggaactgtacacat
gagtgcactgagtttggtcattcagattcatgctggatgccatcgccgaaccgaaactca
aaacttaccaggagtggatcaaaactttccacttttgtgccttaccatgagtgggagcct
cagcagccagtgataggcaatggaagtcccaaacccatgagagaggagcttgggggtgag
gccagtaagctatctggaatttgcttcatgaccctctacactagtgcttactctgctggg
ggtgagggtgtgaaggatggtgctatggaggaaactccattgagccaaacagcagtgact
ttttcttccaggcaggggtccaaaaaggagatttacctgtga
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