Trichomycterus rosablanca: 134319389
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Entry
134319389 CDS
T09921
Symbol
pcdh19
Name
(RefSeq) protocadherin-19 isoform X1
KO
K16499
protocadherin delta 2
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
trn04515
]
134319389 (pcdh19)
Cell adhesion molecules [BR:
trn04515
]
Cadherins
Protocadherins
134319389 (pcdh19)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
PepSY
Motif
Other DBs
NCBI-GeneID:
134319389
NCBI-ProteinID:
XP_062856613
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All DBs
Position
8:complement(18288610..18385040)
Genome browser
AA seq
1086 aa
AA seq
DB search
MDFVPAIVFFVACWIGTGAVFNLKYTVEEELRAGTKIANVTADAKVAGFALGSRQPYLRV
ISNSEPRWVNLSPAGLLITKQKIDRDAVCRQMPKCVISLEVMSNSMEICAIKIEILDIND
NAPRFPTSHIEIEISENAAPGTRFPLEGASDPDAGSNGVQTYTITPNDIFGLEIKTRGDG
SKIAELVVEKTLDRETQPHYTFEITAEDGGDPPKTGNVQLNIKVIDSNDNNPVFDEPVYS
VNVMENSQLNTLVIDLNATDPDEGTNGEVVYSFNNFVSNLTKQMFKIDPKTGVITVNGIL
DHEEMHVHEIDVQAKDLGPNSIPAHCKVIVNVIDVNDNAPEIKLLSENSEMVEVSENAPL
GYVIALVRVSDNDSGANGKVQCRLQGNVPFRLNEFESFSTLLVDGRLDREQRDMYNLTIL
AEDSGYPPLRSSKSFAVKVTDENDNPPYFTKPHYQAMVLENNVPGAFLLSVSARDPDLGM
NGTVSYEIINSEVRGMSVESYVTVNSNGEIYGVRAFNHEDTRTFEFKVSAKDGGDPSLTS
NATVRIVVLDVNDNTPVMTTPPLVNGTAEVSIPKNAGVGYLVTQIKADDYDEGENGRLTY
SISEGDMAYFEIDQINGEVRTTKIFGESAKPSYQITVVAHDHGQTSLSASAYIVVYLSPD
LNTQEQIGPVNLSLIFIIALGSIAAILFVTMIFVAVKCKRDNKEIRTYNCSFFYLRRVAE
YSYGNQKKSSKKKKLSKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTLPLGCR
RSESTFLNVESQNNRNAAPNHGYHHTFTGQGPQQPDLIINGMPLPETENYSIDSSYVNSR
AHLIKSTSTFKDMEGNSLKDSGHEESDQTDSEHDVQRGHYVDTAVNDMLNTTMPPNSHQL
SEPDPSEGFHCQEECRILGHSDRCWMPRVPVQPHVKSPEHGRDVIALSIEATGVDMPHYE
DCGTTKRTFATFGKDGPEEGPKGKRMGEMMSICSPKATSAIREAGNGREAISPITSPAHL
KSPQSKQTSGYNTLKCRDAERIANHSLLRQPEGKDSEPSIHEINTLLQDGREKESPSSKR
LKDIVL
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atggatttcgtaccagcgattgtgttctttgtggcgtgctggatcggcaccggtgcagtt
ttcaatcttaagtacacagtggaggaagaactgcgcgcaggaaccaagatcgccaacgtg
accgcggatgccaaagtggctggatttgcgctgggaagccgacaaccttatttgcgcgtg
atctccaattccgagccacgatgggtgaacctgagcccggcaggacttcttatcactaag
cagaaaatcgatcgcgatgctgtttgtcggcagatgccaaagtgcgtgatttctttagag
gtgatgtctaactctatggagatctgcgcgattaaaatcgaaatcttggacataaatgat
aacgcgcctcgattcccgaccagccatatcgagatcgaaatttcggaaaacgctgctccg
ggtacgcggttccctctagagggggcgagcgatccggacgccggaagcaatggcgtacag
acctacacgatcaccccgaatgatatcttcggcttggagatcaagactagaggagatgga
tctaaaatcgccgagctggttgtggaaaagactctggatagggagacgcagcctcattac
acgtttgagataacagccgaggatggtggagaccccccaaagactggcaatgtccaactt
aatattaaagttatagactcaaacgataataatcctgtttttgatgagccagtctacagt
gttaacgtgatggagaattctcagttaaatacattagtaatagacttaaacgctacggat
cctgacgaagggacaaatggtgaagttgtttattcctttaataattttgtttccaaccta
actaagcagatgttcaaaatcgatcccaaaaccggtgtcataacagtgaacgggattcta
gatcatgaagaaatgcatgtgcatgaaatagatgttcaagccaaagatctgggtcctaat
tccatccctgctcactgcaaagttatagtcaatgtcatagatgtcaatgacaatgcacct
gaaattaaacttttgtcagagaacagtgaaatggttgaggtgagtgagaacgcacctctt
ggatatgtcattgcccttgtcagagtatcagacaatgactcgggtgcaaacggcaaagtc
cagtgcagactgcagggcaatgtgccattcagacttaatgagtttgaaagcttctccacc
ttacttgttgatggcagactagacagggagcagagagatatgtacaatctgaccatcttg
gcagaggatagtgggtatcccccactaagaagttcaaaatcatttgctgttaaagttaca
gatgaaaatgataaccctccatattttacaaagccacattaccaagcaatggttctggaa
aacaacgttccaggtgcatttcttctttcagtctctgctagagaccctgatctgggaatg
aatggcacagtatcctacgaaattatcaactctgaggtgcgtggaatgtctgtagagtca
tatgtcactgtaaattcaaatggagaaatttatggagtcagggcttttaatcatgaagac
actcgaacatttgaatttaaggtctcagcaaaagatggaggagatccctcattaacaagc
aacgcgaccgttcgaattgtcgtactggatgtaaatgacaacacacctgtaatgacgacc
ccaccactggttaatggcactgctgaggtgtccatcccaaaaaatgctggagttggttat
ctggttactcagataaaggccgatgactatgatgagggagaaaacggaaggctgacgtat
tccatctcagagggagacatggcctactttgaaatcgatcagattaatggggaggtgcga
actacaaaaatatttggagaaagcgccaagccctcctatcagatcacagtcgtagctcac
gaccatggtcaaacatctttatctgcttctgcttatattgtcgtctatctctctccggac
cttaacacccaggagcaaattggacccgtgaacctgtccttgattttcatcatcgctttg
ggctccattgctgctatcctgtttgttacaatgatcttcgtggcagtcaaatgcaagagg
gataacaaagaaattcgcacatacaactgcagtttcttttacctgcgcagggtggcggag
tactcgtacggcaaccagaagaagtcaagcaaaaagaaaaagctcagcaagaatgacatc
cggctggttcctcgcgacgtagaggagactgacaaaatgaatgtggtgagctgctcgtcc
cttacctcttcacttaactacttcgactaccaccagcagactctgccgctgggctgcagg
cgatctgagagcaccttccttaatgtggagagccagaacaacagaaatgcggcaccaaac
catggctaccaccacacttttactgggcagggcccacagcagcctgatctcatcataaac
ggcatgccgctgcctgagacggagaattattcaattgactccagttatgtaaacagcaga
gcacaccttattaaaagtacctcaacatttaaggacatggaaggcaacagtctaaaggac
agtggtcatgaggagagtgaccagactgatagcgagcacgacgtgcagagaggccattat
gtcgacacggccgtcaacgacatgcttaatacgaccatgcctcccaatagccaccagctg
tcagagccagatccctcagaaggctttcactgccaggaggaatgtcgcattctgggccac
tcagaccgctgctggatgccacgagtgcctgttcagccacatgtcaaatcaccagagcat
ggccgtgatgtcatcgccctgtctatcgaagccaccggtgttgacatgccccattatgag
gactgtggtaccaccaaaagaacttttgccacttttggcaaggatggtccagaggaaggg
ccaaagggcaaacggatgggtgagatgatgagcatctgcagccctaaagccaccagtgcc
atccgtgaggctggaaacgggcgagaggccatcagccccatcacatcaccggctcatctc
aagagcccacagtccaagcagacctctggttacaacacgctaaaatgccgtgatgcagaa
cgtattgccaaccacagtctgctccgtcagccagagggcaaagacagtgagccgtccata
cacgagatcaacacactcctccaagatggtcgggagaaagagtcccccagtagcaagcgt
cttaaggacattgtgctttaa
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