Trichomycterus rosablanca: 134319440
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Entry
134319440 CDS
T09921
Symbol
syvn1
Name
(RefSeq) E3 ubiquitin-protein ligase synoviolin
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
trn
Trichomycterus rosablanca
Pathway
trn04120
Ubiquitin mediated proteolysis
trn04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
134319440 (syvn1)
04120 Ubiquitin mediated proteolysis
134319440 (syvn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
trn04121
]
134319440 (syvn1)
Enzymes [BR:
trn01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
134319440 (syvn1)
Ubiquitin system [BR:
trn04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
134319440 (syvn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4
zf-rbx1
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_16
zf-RING_11
zf-RING_5
zf-ANAPC11
zf-RING-like
zf-HC5HC2H
FANCL_C
zf-Nse
Motif
Other DBs
NCBI-GeneID:
134319440
NCBI-ProteinID:
XP_062856688
LinkDB
All DBs
Position
8:complement(25683768..25696997)
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AA seq
615 aa
AA seq
DB search
MVRAALVTATSLALTGAVIAHAYFLKHQFYPTVVYLTKSSPSMAVIYIQAFVLVFLLGKF
MRKVFFGQLRAAEMEHLIERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLA
EDRVDFMERSPNISWVFHFRVLSLMLLLGILDFLFVNHACHSIITRGASVQLVFGFEYAI
LMTVVLTTFIKYTLHTIDLQSENPWENKAVYMLYTELFTGFIKVLLYMAFMTIMIKVHTF
PLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEDLQASDNVCIICREEMVT
GAKKLPCNHIFHSSCLRSWFQRQQTCPTCRMDVLRASQPNATPAPAAPAAPAAPAAPANA
PAPPVANVAPGMMPQFPPGLFPFWAPFPGAVPPAPPPGAPANSSTPQSTTDATQTAAADS
AASTSSQPATDAAATTDAHVAGMPGFPLTMPPPFPSAPWLPMPPPPPFMSSMPPPPASLS
TMSEEELRELEQEGRRGLEARLQCLQNIHTLLDAAMLNIHHYLTTVATLSPPQSESSPGE
GSSSARTEASSQENQAQSTDPVNGAAGFSLPDSTTAAERDDKRDEVEGDDEGEPNTAELR
RRRLRKLDTTPPLDH
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggtgcgagcagctctcgtgaccgctaccagtctggcactgactggagccgtgatagct
catgcctatttcctcaagcaccagttctaccctactgtggtataccttaccaaaagcagc
ccaagcatggcagtcatatatatccaggcttttgtgttggtgtttttgttgggaaagttc
atgcgcaaggtctttttcggccagctgagagctgcagagatggagcacctgatcgagcgt
tcctggtacgcagtaacagagacctgcttagcctttacggtgttcagggacgacttttcc
cctcgttttgtggccctttttactttgctgctcttccttaagtgcttccattggcttgct
gaagacagggtggactttatggaaagaagtccaaacatttcatgggtcttccacttcaga
gttctctctttaatgttgttgcttggaattctggactttctgtttgtcaatcatgcctgc
cacagcatcatcaccagaggagcttcagtacagctggtgtttggatttgagtatgcaatt
ctgatgaccgtggttcttactaccttcatcaaatacaccttgcacaccatcgatcttcag
agcgagaacccatgggaaaataaagcagtctatatgctctacacagagctatttacaggc
ttcattaaggtgctgctgtacatggcattcatgacgataatgatcaaagtgcacaccttc
cctctgtttgctattcgacccatgtatcttgcaatgaggcaattcaagaaggctgtaacc
gatgcaataatgtctcgacgggctattcgcaacatgaacacactctacccagatgccact
cctgaggacttgcaggcatctgacaacgtttgtatcatctgtcgagaagagatggtaact
ggagccaagaaactgccctgcaaccacatctttcactcaagttgccttcgctcgtggttc
cagaggcagcagacctgcccaacatgccgtatggatgttctgcgagcatcacagcccaat
gcaactcctgctccagccgcaccagccgcccctgctgctcctgcagcaccagccaatgct
cctgcacccccagttgctaatgttgctccaggcatgatgccccaattccctccaggcctt
tttcctttttgggctcctttccctggtgctgtgcctcctgcacctccgcctggtgcacca
gcaaactcaagcactccacaaagtactacagatgcaacccaaacagcagcagcagattca
gcagccagtacctcaagccagcctgctacagatgctgctgccactacagacgctcatgtg
gctggaatgcctggatttcctctcaccatgccaccaccgttcccgtctgcaccatggctg
cccatgcctcctcctccaccattcatgtcgtccatgcctcctcctccggcgtctctgtcc
accatgtccgaggaggagttgagggagctggagcaggaaggccgacgaggcctggaggct
cgactgcagtgccttcagaacatccacacactgctggatgctgccatgctcaacatccac
cactacctcaccactgttgctacactcagtcctcctcaatcagagagcagccctggtgaa
ggaagttcatcagccagaactgaggcctccagccaagagaatcaagcacaaagcaccgat
cctgtcaatggggcagcaggtttttccctacccgactcgaccacagcagcagagagggat
gacaagagggatgaagtggaaggagatgacgaaggtgagccaaacactgctgaactgaga
cgacgtcgcctgcgaaagctggacaccacaccacctctggaccactga
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