Trichomycterus rosablanca: 134319480
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Entry
134319480 CDS
T09921
Symbol
si:ch211-114c17.1
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
trn03041
]
134319480 (si:ch211-114c17.1)
Spliceosome [BR:
trn03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
134319480 (si:ch211-114c17.1)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_19
TPR_16
TPR_MalT
HrpB1_HrpK
Motif
Other DBs
NCBI-GeneID:
134319480
NCBI-ProteinID:
XP_062856746
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All DBs
Position
8:29863301..29879788
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AA seq
705 aa
AA seq
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MAAEGAEEFSSSGAFTNPSGFEAPTVTDFSQSNLGGVSEDSSGANMADISAAYTAPSASG
EDAGETPVDFNRLWKMVTDNPQDFNSWTDLLQCCEQEGNLTSSRQALNAFLARYPLCYGY
WKKFADLERRAGYNDKAEEVCVQGLKAIPLSVDLWIHYINLLLGTLNMNQPESIQRIRSI
FEDAVVAVGCDWHSDRLWDLFAEWEKEQGDLKAITAVYDRVMQVPTQLYNTHYEKLKTHL
KSHALQDLLNPEEYKKLQAEYMAIETQAKKEESEPASAEKNESLPGEEDSSGSGKYSEEA
VDKMQELVLASREIQYQQNEAEVRKRWSYEDAIKRPYFHVKLLDRAQLNAWHSYLDWEIA
EAEAALRVTEGTSVEGQEGSEFKGTIASHKRVMILFERCLIACALYEEFWDKYVRYLEPH
SLEETRGLYQRACEIHLPYKHSFHMQWAMFEERQGNILEAQRILEALEKTMPGLAMVRMR
RVGLERRMGHLDTAESLLKESVEENKDKPYLHAFFSIKLARFLFKLRKNPSHARSVLQEA
IEISLDNSKLYMNLLELELSGDLQLNGGGVQQCVSKALSAPISSESKILFSRIGLQFAED
FGTSVQSLLSIYKEHQKLLSDLGGRKRGAENGDNDDPEKMSKVDDGSGTTASLHDVPPTM
PPPPPPVAGADMSAYGNYSSWYQQQYGGYGAYNSWNQYNQYYPSS
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagaaggagcagaagaatttagcagcagtggggcttttacaaacccctcaggg
tttgaagctcccacagtcacagacttctcccagtcaaatttaggaggggtttctgaggac
agcagtggagcaaatatggcagatatttcagcagcctacactgcaccgtcagcatcagga
gaggatgcaggagaaacaccagtggattttaacaggttatggaagatggtgactgacaac
cctcaggacttcaacagctggactgatttattacagtgctgtgaacaagaggggaatttg
acatcatctcgccaggctctaaatgcatttctggcaagatacccactctgctatggatac
tggaaaaaatttgcagatctggagaggcgagctggctataacgacaaagctgaggaggtg
tgtgttcagggactcaaggctatacctctaagtgtggatctgtggattcattacataaac
ctcctgcttggtacactcaacatgaaccagcctgagtccatacagcgtattcgcagtata
tttgaagacgctgtggtggcagtaggctgcgactggcactcagaccgtctttgggatctg
tttgctgagtgggaaaaggaacagggagacctgaaggccataactgcggtttatgaccgt
gtaatgcaagtgcccactcagctctacaacacccactatgaaaagctgaagactcattta
aagtcacatgcactccaggatttgcttaaccctgaggaatataaaaaactccaggctgaa
tacatggccattgagactcaggccaagaaagaggaatctgagcctgcatctgctgagaaa
aatgaaagcctgcccggggaggaagattcttcaggcagcggcaaatattctgaggaggca
gtggataagatgcaggagctggttttagccagcagagagatacagtaccagcaaaatgag
gctgaagtcaggaagagatggagctatgaggatgctattaaaaggccgtatttccacgtg
aagctcttggatagagctcagctgaacgcttggcacagttatttggattgggagatagct
gaagctgaagcagcactaagagttactgaggggacatctgtagaaggccaagagggttca
gagtttaaaggaaccatcgctagccataaaagagtgatgattttgtttgagcgctgcctt
attgcctgtgcactctatgaggagttctgggataagtacgttcgatacctagagccacat
agtctggaggaaacgcgtggcttgtatcagcgagcttgtgaaatccacttgccgtacaaa
cacagttttcacatgcagtgggccatgtttgaagagagacaaggtaacattttagaagcc
caacgcattttagaagctttagagaagaccatgcccgggttggctatggtccgaatgcgg
agggtaggactagagaggaggatgggtcatctggatacggctgaatcgctgctaaaggag
tcagtggaggagaataaagacaagccataccttcatgcctttttctccatcaaactagcc
cgtttcctgttcaagttacgcaagaacccatcacatgcccgatctgttctacaggaggct
attgaaattagtttggacaacagtaaactgtacatgaatctgctggagctcgagctgtcg
ggggacctgcagctcaatggaggaggagttcagcagtgtgtgagcaaagccttatctgca
ccgatttcatcagagagcaaaatccttttttctcgaataggcctgcagtttgctgaagat
ttcgggacttctgtgcaaagtttattgagtatctataaagaacaccaaaagcttctaagt
gaccttggtggaagaaagcgaggagcagagaatggtgataatgatgatccagaaaaaatg
agtaaggttgatgatggctctggcacgacggcctctttacatgatgtgccacctactatg
ccccctcctcctcctccagtggcgggtgcagatatgagtgcatatggaaactacagctct
tggtatcagcagcagtatggtggatatggtgcctacaactcctggaatcagtacaatcaa
tactacccttccagctag
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