Trichomycterus rosablanca: 134319509
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Entry
134319509 CDS
T09921
Symbol
si:dkey-219c3.2
Name
(RefSeq) transcription initiation factor TFIID subunit 4
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
trn
Trichomycterus rosablanca
Pathway
trn03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
134319509 (si:dkey-219c3.2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
trn03021
]
134319509 (si:dkey-219c3.2)
03036 Chromosome and associated proteins [BR:
trn03036
]
134319509 (si:dkey-219c3.2)
Transcription machinery [BR:
trn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
134319509 (si:dkey-219c3.2)
Coactivators
SAGA/TFTC/STAGA complex
134319509 (si:dkey-219c3.2)
Chromosome and associated proteins [BR:
trn03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
134319509 (si:dkey-219c3.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Saf4_Yju2
DUF406
Motif
Other DBs
NCBI-GeneID:
134319509
NCBI-ProteinID:
XP_062856793
LinkDB
All DBs
Position
8:31189614..31246018
Genome browser
AA seq
932 aa
AA seq
DB search
MAGVTDPLEDVLYSAVDEKAVSDLVGSLESQLGSQNKTESEGRRAGVPQTGSTSSSGSSK
LVKAQAVEAGSENGAQRAPSINNSLPVPVSAVGIMTTTRMQPNVTIVPKPVAPGHATSPN
CSSDAAVVASSLTADALSNTNHLGASTRAGENGSGATQPASTPLPGLQGSVNGAGIGTTS
NGTNSPFPSVQSNHVLSQPACPSPVPTLALHRPPPSAPDPKLPVQTAPITTNPGLIRPIP
APQTSQIKTIVPNQLAGTSVAVRSPLLKPVAPHMPTSASGTTLPVASTASVLVKPDAGQA
AGILRPATPVPAPSLVRPGVAAAPAPRAVAPQVMVRPQQQTTIQLPPGFTIPQGMVLVRT
ETGQLVLVPQQVLAQAKAQTKAALSPTPAPSPTTTAGATFRVTTSVQPSPVTSQAIRPIP
PAQAKVVQAATPISPAPQSPVVTVSTTPKPSAPTVITTGARIQTPQTLVKPGCTVSAPAA
PTAGVPGLSQEMQENVKKCKNFLATLIKLASHNSPSPETSRNVKALVQDLLDAKIEPEEF
TNRLQTELKSSPQPYLIPFLKKSLPALRITLLNSQQSLTQLAQASVPPSPLTVNAIKAPP
PRSLAPTVRPTITPDNAATAIKRPGVQPVPVRMPVVITQTIRPQGTVVRGPAVPVGVALQ
ASANQKQKLNDPGGGTFRDDDDINDVASMAGVNLNEENARILATGSELVGTQIRSCKDES
FLPANLLHKRILEIARKFGVSDVMGDVVSLVSHATENRLRSMLENVSALARHRTEACKDE
EQHEQSSDVRTQLKFFEQLERMEKQRKDDEEREILLKVAKSRSRQEDPEQARLKQKAKEM
QQQELAQIRQRDANLTALAAIGPRKKRKLDSPGASGAEASGSSSGTAGASSSSSSRQVRQ
RITRVNLRDLIFCLEQERSTSRSLLLYKALLK
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgtcaccgatccgctggaagatgtgctgtattcagcagtggacgagaaagcc
gtcagtgacctggtgggttcgttagaatcgcagttgggctcgcagaacaaaacggagagc
gaggggcgcagagctggggttccgcagaccggcagcactagcagcagcggcagcagtaag
ttggtgaaagcgcaggcggtggaagcgggaagcgagaacggggcacagagggcaccatcc
atcaacaactccttacctgtaccagtcagcgcagtgggcatcatgactaccacccggatg
cagcccaacgttaccatagtaccaaagccggtggctccggggcacgcaacttctcccaac
tgttcaagtgacgcagcagtagtggcatcatcattaactgctgatgccctttctaacacc
aatcacttaggagcatctacacgagctggtgagaatggcagtggcgccactcaacctgcc
agcactcctctaccaggattgcagggtagtgtgaatggtgctggcattggcaccacttcc
aatggcacaaactctccttttccttctgtccagtctaatcatgtactatcccaacctgca
tgcccttctccagttcctactctcgccctgcaccggcctccacccagcgctcctgacccc
aaactgcctgtccagactgcacctattaccacaaatccaggtttgatcagacccatcccc
gctccccaaacctcccagatcaaaaccattgtcccgaaccagctcgctggtacctctgtg
gctgtgcgttcccctctacttaaaccagttgccccacacatgcccacgagtgcctcaggt
accacgcttccagtagcaagcacggcgtccgttctggtcaagccagatgcaggccaggct
gcaggcatattgagaccggcgactccagttccagcgccaagcttggtgcgacccggggtt
gctgcagcaccagcgcctagggctgtagcccctcaggtcatggtcagaccccaacaacag
accaccattcagttaccaccgggattcaccattccacagggcatggtgttggtccgaaca
gaaaccggtcagctggtgctggttcctcaacaggttttggcccaggctaaagctcagact
aaagcggctttgtctcctacacctgcaccctcaccgaccaccacagctggagccacgttc
agggtcacaacttctgtacagccatcgcctgtaacttcacaagccatccggccaattccc
cctgcccaggcaaaagtggtacaggcagcaacccctatcagccctgctccacagagccca
gtggtgacggtgagtactactccgaagcccagcgcccccactgttatcacaactggagct
cggatccagactcctcagacgctcgtgaaacccggatgcacagtttcagcacccgctgct
cctacggcaggagtccctggtctctctcaggaaatgcaagagaatgtgaaaaagtgcaag
aacttcctagctacgttaattaaactggcgtcccataactctccctctccagagacgtca
cggaacgtgaaggcacttgtgcaggatctgctggatgccaaaatcgagcctgaggaattt
acgaatcgcctgcaaacagagctaaagtcatctcctcaaccctacctcatccccttttta
aagaaaagtctacctgctctgcgcataaccctgttgaactctcagcagtctctaactcag
cttgcccaagcctctgtacccccaagcccgctgactgtaaacgccattaaagctccacct
cctcgctccctggcacccactgtccgacccaccatcacaccagacaatgctgccacggcg
attaagaggccaggagtgcagcctgttcccgtacggatgcccgtagtgatcacccagacc
atccggcctcaaggcacagtggtaagaggaccagcagtaccagtgggtgttgctttgcaa
gcatcagccaatcagaaacagaagttgaatgatccgggaggtggaactttcagagatgat
gacgacattaacgacgtggcatccatggcgggcgtgaacctgaacgaagaaaacgcccgt
atattagccacaggctctgagctggtgggcacacaaatccgctcctgcaaagatgagtca
tttctgccagctaatcttctccacaagcgcatccttgagatcgcacgaaagtttggagtg
agtgatgtgatgggggacgtggtgagtctggtgtcccatgctacggaaaacaggttgcgc
tccatgctggagaatgtttcagctctcgcaagacatcgaacagaagcctgcaaggatgag
gagcagcacgagcagtcgtctgatgtaagaacgcagctgaagttcttcgagcagctggag
aggatggagaaacagcgtaaggatgatgaagaaagggagatcctgctcaaagtggccaaa
agtcgttccaggcaagaagaccctgagcaggctcggctaaagcagaaagctaaagagatg
cagcagcaagaactggctcagatcagacagcgtgatgctaatctaaccgccctcgccgct
ataggaccacgcaaaaaacgcaaactggactctcctggtgcttctggagcagaggcatct
ggaagctcttcgggcacggcgggtgcctcatcgtcctcctcgtctcggcaggtgaggcag
cggatcacgcgggtgaacctcagggacttgattttctgcctggagcaggaacgatccaca
tcccgctcactgcttctctacaaggctctgctcaaataa
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