Trichomycterus rosablanca: 134319612
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Entry
134319612 CDS
T09921
Symbol
rnf20
Name
(RefSeq) E3 ubiquitin-protein ligase BRE1A
KO
K10696
E3 ubiquitin-protein ligase BRE1 [EC:
2.3.2.27
]
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
trn04121
]
134319612 (rnf20)
Enzymes [BR:
trn01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
134319612 (rnf20)
Ubiquitin system [BR:
trn04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
BRE1 proteins
134319612 (rnf20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRE1B
zf-C3HC4
zf-C3HC4_3
zf-C3HC4_2
CC_Bre1
CCDC39
zf-RING_UBOX
BRE1
zf-RING_5
zf-RING_2
zf-rbx1
OmpH
SOGA
Motif
Other DBs
NCBI-GeneID:
134319612
NCBI-ProteinID:
XP_062856961
LinkDB
All DBs
Position
8:complement(40833522..40853196)
Genome browser
AA seq
993 aa
AA seq
DB search
MSAQKRPCDPSGSSGGPPEKRRDREGGDAGEGLSSGASTAVETVIKLGGVANSEEQDIKA
LQVKNRKLGEALDQRQVIEDELRERVERLETRQATDDASLLILNRYWNQFDENMRSIARR
YDQSGKEPAESQPGEGRSLKPGTPELDGDSNQERAKDKGEGAISFLAILASSSTEEMEAE
LQERVESSRKQAGSVVEVYESWKSAVDQLKKDLVSGTDSGLWEVGARLNALLRDENERLR
QLTDDLKQKHSHMTSESRSLARAATRAEKRIGELQVSVEELQWDTEKIRRRENRLNTHLS
EVLERVNSKGYKVCGEASSVCGTITINKRKFEDMNSELEENRELAENRLSELQKLQQDLQ
TVVQENNNMKTELMSRAEGVVKDTAEYRCLQSQFSVLYNESLVLKAQLDETRVRLNTTRA
SRLRQLDHMENDEVSLQHKVRTEVIQLEDTLAQVRKEYEMLRIEFEQTLAANEQAGPINR
EMRHLISTLQNHNQQMKGEVVKYKLRLREAQQELNQLRSAKGNPVAQSRPSTEADIKEEP
GSHVAPASSGDTTVKAGPDSGSTTPTIAAAVKIEPGTEPEPAVKEEEKEKEKEKEQKERE
RPPRVSAPVKEEKAATSGGQSDDPPPERYAPVGAPKRKEMEQLKVVRVELKKAQESQREM
KLLLDMYRSAPKEQRDKVQLMAAEKKSKAEAEELRQRLRDLEERERREGKKMADEEALRK
IRLVEEQIDVLNKKLSLAKQEEDALLSEMDVTGQAFEDMQEQNIRLMQQLREKDDANFKL
MSERIKSNQIHKLLKEEKEELADQMLTLKTQVDAQMQVVRKLEEKERLLQGTVSAAEREL
GLRTQALDMNKRKAQDSTQQSEEMRAQLESVQQRLKEVRAEVVENSISREKESFNARRAQ
EDISKLRRKIETAKKPAESMRNGDEILNEEINEYKARLTCPCCNSRVKDAVLTKCFHVFC
FECVKTRYDTRQRKCPKCNAAFGANDFHRIYIG
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctcagaagaggccttgtgatcccagcggctcctccggcggcccacctgagaag
cgacgggatcgagagggaggagatgcaggagagggtctcagctcgggggcgagcactgct
gtggagacggtcatcaaactggggggcgtcgccaactcggaggagcaggacattaaagca
ctgcaggtgaaaaacagaaagctgggagaggccctggaccaaagacaggttatcgaagat
gagttgagggagagagtcgagaggcttgagactcgccaggctaccgacgatgccagtctc
ctcatcctcaacagatactggaaccagttcgacgagaatatgaggtcgattgcgcggcgc
tacgaccaatcaggaaaagagcctgcggaaagccagcctggtgaggggcggagcctgaag
cctggcacgcctgagctggatggagactccaatcaggagcgagccaaggacaagggtgag
ggagcgatttcctttctcgccatcctggccagcagcagcaccgaggagatggaggcagag
ctgcaggagagagtggagtccagtcgtaaacaggctggctctgtggtagaggtttatgag
agctggaagagcgctgtggatcagctgaagaaggacctggtgtctggcacagacagcggt
ctgtgggaggtcggcgctcggctgaacgccctgctgagagacgagaacgagcggcttcgt
cagctgaccgacgacctcaagcagaagcatagtcacatgaccagcgagtctcgctctctg
gcccgcgccgccacccgtgccgagaagagaatcggcgagcttcaggtgtccgtagaggag
ctgcagtgggacacggagaagatccggcgcagggaaaaccgcctcaacactcacctgagc
gaggtcctggagagggtgaacagtaaaggctataaggtgtgtggcgaggccagcagtgtg
tgtggcaccatcaccatcaacaagagaaagtttgaggacatgaacagtgagctggaggag
aacagggagctggcggagaaccggctcagtgagctgcaaaaactacagcaggacctacag
acagtcgtccaggagaacaataacatgaagacggagcttatgtccagagccgagggcgtg
gtcaaggacacggccgagtatcgctgcctgcagtctcagttctcggtcctttataacgaa
tctttggtcctgaaggcccaactggacgagaccagagtccgtctgaacaccactcgggcc
tcccgtctccgccagctcgaccacatggagaacgacgaggtctctctgcagcataaagtc
cgtaccgaggtgattcagctggaggacacgctggctcaggtacgtaaggaatacgagatg
ctgaggatcgagttcgagcaaacgctcgctgcgaacgagcaagcaggccctataaatcgg
gagatgcgccacctcatcagcacccttcagaaccacaatcagcagatgaagggcgaggtg
gtcaaatacaagctcaggctgagggaggctcagcaggagctaaaccagctccgttctgcc
aagggtaatcccgtcgcccaatcacggccgagcacggaggcggacatcaaagaagaacca
gggtcacatgtcgcgccggccagctctggtgataccacggtgaaagcaggacctgatagt
ggatcgaccacgcccacaattgctgcggcggtaaagatcgagcccggaacagaaccagaa
cccgccgtgaaggaagaagagaaggagaaggagaaggagaaggagcagaaagaacgagaa
cgcccgcctcgcgtgagcgcgccggtaaaagaagagaaggcggccactagcggcggccag
tcggacgacccgccgcccgagcgctacgcccccgtcggagcgccgaaaagaaaggagatg
gagcagctgaaggtggtcagggtggagctcaagaaggcgcaggagtcccagagagagatg
aagctcctgctggacatgtatcgctccgccccgaaagaacagagggacaaagtgcagctc
atggctgctgagaaaaagtccaaggctgaggcggaggagctgcgccagcgcctgcgggac
ctggaggagagggagaggagagaggggaagaagatggccgacgaggaggctctgcgaaag
atccgcctggtggaggagcagatcgacgttctcaacaagaagctctccctcgccaagcag
gaggaagacgccctgctgagcgagatggacgtcaccgggcaggccttcgaggacatgcag
gagcagaacatccgcctgatgcagcagctgcgcgagaaagacgacgccaacttcaaactc
atgagcgagcgcatcaagtccaaccagatccacaaactcctgaaggaggagaaggaggag
ctggccgatcagatgctcaccctaaaaacgcaggtcgacgctcagatgcaggttgtgagg
aagctggaggagaaggagcgcctcctgcagggcaccgtcagcgcggcggagagagaactg
ggcctgcgcacacaggccctggacatgaacaagcgcaaggcgcaggactcgacgcagcag
tcggaggaaatgcgagctcagctggagtccgtgcagcagagactgaaggaggttcgagcg
gaggtggtcgagaacagcatctccagagagaaggagtcctttaacgcccgccgggcacag
gaggacatctccaaactgcgccgaaaaatcgaaactgccaagaaacccgcagagagcatg
cgcaacggcgacgagatcctcaacgaggagattaacgagtacaaggcccgcctgacgtgt
ccgtgctgcaactctcgcgtgaaggacgccgtgctgaccaagtgctttcacgtcttctgc
ttcgagtgcgtgaagacgcgctacgacacccgccagaggaaatgccccaagtgcaacgcc
gccttcggggccaacgatttccaccgcatctacatcggctag
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