KEGG   Trichomycterus rosablanca: 134319973
Entry
134319973         CDS       T09921                                 
Symbol
smu1a
Name
(RefSeq) WD40 repeat-containing protein SMU1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
trn  Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:trn00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:trn03041]
    134319973 (smu1a)
Spliceosome [BR:trn03041]
 Complex B
  Other components
   Complex B specific factors
    134319973 (smu1a)
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd WDR55 Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 EIF3I ANAPC4_WD40 WD40_Gbeta Beta-prop_EML Beta-prop_WDR90_POC16_2nd LisH_TPL Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_ACSF4 Beta-prop_RIG_2nd Ge1_WD40 WDR90_beta-prop_4th Beta-prop_Nup120_160 Beta-prop_VPS8 Beta-prop_Aladin Beta-prop_Vps41 Beta-prop_TEP1_C Beta-prop_NWD2_C WD40_MABP1-WDR62_1st Beta-prop_HPS5 Beta-prop_DCAF4 Beta-prop_WDR41 Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_NUP159_NUP214 Beta-prop_IFT140_1st Beta-prop_SPT8 Beta-prop_DCAF12 Beta-prop_EIPR1 Beta-prop_WDR35_TULP_N Beta-prop_WDR75_2nd Beta-prop_WDR19_1st WD40_RFWD3 Beta-prop_BBS7 Beta-prop_IP5PC_F Beta-prop_RSE1_2nd VPS8_N LisH PROPPIN LisH_PAC1 DUF7165 Beta-prop_NOL10_N LisH_WDR26 Ricin_B_lectin zf_topless PA14
Other DBs
NCBI-GeneID: 134319973
NCBI-ProteinID: XP_062857330
LinkDB
Position
1:26319461..26329157
AA seq 513 aa
MSLEIESADVIRLIMQYLKENNLHRTLATLQEETTVSLNTVDSIESFVADINSGHWDTVL
QAIQSLKLPDKTLIDLYEQVVLELIELRELGAARSLLRQTDPMIMLKQTQPERYIHLENL
LARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQSLKWQQHQGLLPP
GMTIDLFRGKAAVKDVEEERFPTQLCRHIKFGQKSHVECSRFSPDGQYLVTGSVDGFIEV
WNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQCLR
RFERAHSKGVTCLSFCKDSSQLLSASFDQTIRVHGLKSGKCLKEFRGHSSFVNEATFTPD
GHYVISASSDGTVKIWNVKTTECSQTFKSLGTSAGTDITVNNVILLPKNPEHFVVCNRSN
TVVIMNMQGQIVRSFSSGKREGGDFVCCTISPRGEWIYCVGEDFVLYCFSTVTGKLERTL
TVHEKDVIGIAHHPHQNMIATYSEDGLLKLWKP
NT seq 1542 nt   +upstreamnt  +downstreamnt
atgtctctcgaaatagaatcagcagacgtgattcgtctgatcatgcagtatttgaaggaa
aataacttgcatcgcaccctggccacactgcaggaggagaccactgtgtccctcaacaca
gtagacagtatcgaaagtttcgtggcagatataaacagtggccactgggacactgtcctg
caggctatccagtccctcaaactcccagacaagacgctgatcgatctttatgagcaggtt
gtgctggagctgatcgagctgagagagctgggtgctgccaggtcattactgagacaaact
gacccaatgatcatgctgaagcagactcagcctgagcgctacattcacctggagaacctg
ctggctcgctcttactttgaccctagagaggcgtaccctgatggcagcagtaaggaaaaa
aggcgtgcagccattgctcaggctcttgcaggagaggtcagcgtggtgccaccatctcgt
cttatggccctgcttggacagtctctgaagtggcagcagcatcagggtctcttacctcct
ggaatgaccattgacttgttcagaggcaaagctgcagtgaaagacgtagaagaagagcgc
ttccctacacagctgtgcagacacatcaagttcggtcagaagtcccatgtggagtgctct
cgcttctctcctgatggtcagtacctggttacaggctctgttgatggtttcatcgaggtc
tggaactttaccacaggcaaaatcagaaaggatcttaaataccaggcgcaggacaacttc
atgatgatggatgatgcagttctgtgcatgtgtttcagcagagacacagagatgctggca
acaggagctcaggatggcaaaattaaggtgtggaagatccaaagcggacaatgtttgcgg
cggtttgaacgtgctcacagtaaaggtgtcacatgtttgagcttctgtaaggacagcagt
cagcttctttcagcttcctttgaccaaaccatcagagttcatgggctgaagtcaggtaag
tgtctgaaggagtttagaggccattcctcatttgtcaatgaagccacattcactcctgat
ggacactacgtcataagtgcctcctctgatggaacagtaaagatctggaatgtaaagacc
acagagtgttcccaaacttttaaatctcttggtacctcagccggcacagacatcacagta
aacaacgtgatcctgcttcctaagaatccagagcattttgtggtgtgcaaccgctccaac
actgtggtcatcatgaacatgcagggccagatcgtgagaagcttcagctctggtaagaga
gaggggggagactttgtgtgctgtacgatctctcccagaggagagtggatctactgtgtg
ggagaggactttgtgctttactgcttcagcacagtcactggcaaactggagagaactctg
actgtccatgagaaggatgtgattggaattgctcatcaccctcatcaaaacatgattgca
acatacagtgaagacggcctgcttaagctctggaagccttaa

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