Trichomycterus rosablanca: 134320034
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Entry
134320034 CDS
T09921
Symbol
taf4b
Name
(RefSeq) transcription initiation factor TFIID subunit 4
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
trn
Trichomycterus rosablanca
Pathway
trn03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
134320034 (taf4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
trn03021
]
134320034 (taf4b)
03036 Chromosome and associated proteins [BR:
trn03036
]
134320034 (taf4b)
Transcription machinery [BR:
trn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
134320034 (taf4b)
Coactivators
SAGA/TFTC/STAGA complex
134320034 (taf4b)
Chromosome and associated proteins [BR:
trn03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
134320034 (taf4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
TAF
TraP
Motif
Other DBs
NCBI-GeneID:
134320034
NCBI-ProteinID:
XP_062857391
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All DBs
Position
9:28479356..28489408
Genome browser
AA seq
864 aa
AA seq
DB search
MPEKESVNACVNEAESPEKTRVSPVTGETPAAASSQVSNKPNTHDASNASTTLSNESVPT
EENKTQFSEPTESHKEEPTKAETPSSSSSIKPSVPVPSNVPSAHMPATPMVIVSTAPVRS
STPLLVGTRVVTAAKVSAQATGTTTPHLGGVSVTSKQVRGPAVTQAPIRGTIMTLSRLST
PQQNVALTQRPQTTPLQLPANFQIPQDMVLIRSDSGQLMLVSQQALAQAQAQGIVSKPST
VTTTVKAQTSQTTATAKSIIRVTLPSSSATVATIVKPAPTTATTVLKPSSSTATSIVKPS
STTGSTIIKTHTVLGAPGIKPSSHHGTTVIKTTVAQKSSICTSTGTVNQKSTNATSATNT
STVKTIGKASLSSLVTQTVRPLGSGPRMISPNIPIKSSSSKVITPVNVTAETLENVKKCK
NFLITLMKLASSGTRSADMAQNVQALVKDLLDGRLEAEEFTEKLYMELKSSPQPYLVPFL
KRSLPAVRQLTPNSQLFIQQCEQPKSSSSSTVSSSTHKPSLTSTSVTSQPLKISVPVRPA
QLVIQQPKGVIVEQRVTSSPRVVFPVQNCTQSKQPIIQSSTQAAVALGRQHSLQAFKAPS
GPVQAAHTHSFKDNTPGSFRDDDDINDVASMAGVNVNEENARILASSSELVGTVVHSCRD
EPFLQTTALQHKILHIGNSMGVAEVNPEVIVLLSHATQERLRDLLEKLSSVAQHHNVSYR
DDWRYTQTSDTRSQLKFLEQLEKMEKQRREEEEREALLRIAKSRTSSEDPEQLRLKQRAK
EMQQLELAQMEHRDANLAALAALGPRKRKPLETFASGTNQVRGLCAQRTVQRGPTRVTFR
DLIFCMEQDRTLKHSLLLYNAFLK
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgccagaaaaggaaagcgtgaatgcctgcgtgaatgaagctgagtcgccagaaaaaacg
cgagtatctcctgtgacgggagagactccagcagcggcatcttctcaggtatcaaataaa
cccaacacacatgatgccagcaacgcttctaccactctatccaacgagtcagtacccaca
gaagaaaataaaactcaattctcagagccaactgagtctcacaaagaggagcctactaaa
gctgaaactccctcctccagctccagcataaagccttctgttcctgtgccatccaatgtg
ccatctgcccatatgcctgccactcccatggttatagtcagtactgctcctgtcaggtcc
tccacacctctgttggtgggtacgagagtggtgacagcagccaaggtcagtgcacaggcg
acagggacaacaactccacatcttggaggagtcagtgtgacctctaaacaggtccgaggc
ccagcagtaacccaggctcctatccgtgggacgataatgacactgtcgaggctatcaact
ccacagcagaatgtagcactgacacagcgacctcagaccacccctctacagctccctgcc
aacttccaaattcctcaagatatggtattaatccgcagcgacagtgggcagttgatgttg
gtatctcagcaggctttggctcaagctcaggcccaggggatagtgtccaaaccatccact
gtcactacaactgtaaaagcacaaacatcccagacaactgcaacagccaaatctatcatt
agagttactcttccatcttcatctgcaactgtagccaccatagtaaagccagcacctaca
acagcaacaactgttctcaaacccagctcttccacagctacctctatagtaaaaccttcc
agtacaactggaagcaccattattaaaactcacacagtgttgggggcccctggcattaag
cccagttctcatcatggtaccacagtaattaagaccacagttgctcagaagtcctcaatc
tgcacctccacagggactgtaaatcagaaaagcactaatgcaaccagtgctaccaataca
tctactgtcaagactattggcaaagcatctctttcctcattagtgacccaaactgtccgc
ccacttggcagtggccctcggatgatctccccaaatattcccatcaaatccagcagcagc
aaagtcatcacaccggtcaatgttacagctgagacattagagaatgtaaagaaatgtaag
aactttctaatcacgctgatgaagttagcgtccagtgggacccgctcagctgacatggca
caaaacgttcaagctcttgttaaggacctgctggatggacgactggaggctgaggaattc
actgagaagctctacatggaactaaaatcttcccctcaaccatacctggttccttttctt
aaaaggagcctgcctgctgtgcgtcaacttaccccaaactcacaactttttattcagcaa
tgtgagcagccaaaatcctcttcttcatctacagtcagtagcagcacccacaagcccagc
ctcacttccacttctgtcacctctcaacctctcaaaatcagtgtaccagtcaggcctgct
cagctggtgatccagcaacccaaaggtgtgatagtggagcagcgtgttacgtcctcacca
cgtgttgtttttccagtacagaactgcacacagtccaagcagccaatcattcagagcagc
acacaagcagccgtggctttgggaaggcagcactcccttcaggcatttaaagctccctct
gggccagttcaagcagcgcacacacacagtttcaaggacaacaccccaggctcttttcgt
gatgatgatgacattaatgatgtggcttccatggccggcgtaaatgtgaacgaggagaac
gctcgcattcttgcctccagttcagaactagtgggtacagtagtgcactcctgcagggac
gagcccttcctgcagaccacagccttacagcacaagatactccatattggtaattcaatg
ggtgttgcagaggtgaatccagaggtgatcgtgttgctttctcatgctacacaggaacga
ctccgagatctgctggaaaagctcagtagtgtagcacaacatcacaatgtatcatacagg
gatgactggcggtacactcagaccagcgacacgcgctctcaactgaagtttttggagcag
ctggagaaaatggagaaacagaggcgagaagaggaagagagggaagcactgctgcgtatc
gctaagagtcgtaccagcagtgaggatcctgagcaactcaggctcaaacagagagcaaaa
gagatgcagcagctggagctggctcagatggagcacagagatgcaaacttggcagcgcta
gcagctctgggaccccgcaagagaaaacctctggagacttttgcatctgggacaaaccag
gttcgggggttatgtgcacagagaactgttcagagagggccaacacgtgtaaccttcaga
gatttgatcttctgcatggaacaggaccgaacacttaaacactctttattactttataat
gctttcttaaagtaa
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