Trichomycterus rosablanca: 134320055
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Entry
134320055 CDS
T09921
Symbol
six4b
Name
(RefSeq) homeobox protein SIX4b isoform X1
KO
K15615
homeobox protein SIX4
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
trn03000
]
134320055 (six4b)
Transcription factors [BR:
trn03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain SINE
134320055 (six4b)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
SIX1_SD
Homeodomain
Homeobox_KN
HTH_TSHZ3
Tudor_Coilin
Motif
Other DBs
NCBI-GeneID:
134320055
NCBI-ProteinID:
XP_062857418
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Position
9:29893997..29902348
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AA seq
607 aa
AA seq
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MSSSSSEMIGTNEIKRENSRALEPRGSVKLSALDPMPMETPGPNAVAVECSPASLAFSPE
QVACVCEALLQGGNVERLARFLWSLPQSELLRGNESILKAQAIVAFHQARYQELYVILEN
HNFSPCNHSSLQDMWYKARYTEAEKARGRPLGAVDKYRLRRKYPLPRTIWDGEETVYCFK
ERSRNALKDMYKRNRYPSPAEKRNLAKITGLSLTQVSNWFKNRRQRDRNPSEAQSKSESD
GNHSTEDESSKGHEELSPRPLSSGSAGSAAHGTSPIVAYSDIGTTVIQQIGDVKMSPLPA
GMGYNGDLASPNSHYLNGGAYIQSHGSNSLLNGLGTTSSHFLTFDSQRVSHGQERLLGGS
SVSYASYSVGAPEASVGKLDSMQSLVSHSEHGAVASYATTTSSSSNTPHLSSYAMVNISG
AENGLGLPPLLLPSSSTAPPHSSAPLEGVVSDSSQQSAQPLLYTLNQAVKEEPLDIGVGY
SYASNVSLDQSANLGYTASLFLSSNLGHSVVNGGSLEPAATAAITSVLSSTEGHSTLAHS
ARGLQEAGGALPSVYRAQEAQLPLSDNLENSVSTREGPHGVCSDLDMEGKELAKLQTVQM
DEDSSDL
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcttcctcgagtgagatgattggcaccaatgagatcaagagggagaactcgagg
gcacttgaacctcgggggagtgtcaagctttccgctctggaccccatgcccatggagacc
ccgggccccaacgcggtggcagtcgaatgctccccggcgtctttggctttctctccggag
caggtcgcgtgcgtatgcgaggcgctgctgcagggcggtaatgtggagcgcttagcccgt
ttcctctggtcgctaccgcagagcgagctgctgcgtggaaacgagagcatcctcaaggcg
caggccatagtcgccttccaccaggcgcgctaccaggaactttatgtcatcctggagaac
cataacttcagcccgtgcaatcactcgtctctgcaggacatgtggtacaaagcgcgctac
actgaggcggagaaggcgcgggggaggccgttaggagctgtggataagtaccggctgcgc
aggaaatacccgttaccgcgcacgatttgggacggagaggagaccgtgtactgctttaag
gagaggtcaaggaacgcgctcaaggacatgtacaagcgcaaccggtacccgtccccggct
gagaagagaaacctcgccaaaattacaggactctctctgacccaggtcagcaactggttc
aaaaacaggaggcagcgcgaccgcaatccgtccgaagcgcaatccaaaagtgaatctgat
ggaaatcacagcactgaggatgagtcgagtaagggccatgaggagctgtcacctcgaccc
ctttccagtggctctgctggttcagctgcccatggaactagccccattgtagcatactct
gacattggcaccaccgtcatccagcaaatcggggatgtcaaaatgtcacccttgccagcg
ggaatgggctataatggtgatctggcaagccccaactctcactatcttaacggtggcgca
tatattcagtcgcatggcagcaacagtctcctaaatggacttggaactacaagtagtcac
ttcttaacctttgattctcagagggtctcccatggccaagaaaggctactaggtggttct
tctgtatcctatgcctcttattctgtgggggctccagaagccagtgttggaaaactagac
agcatgcagtccttggtttcacattcagaacacggagcagtggcctcgtatgccaccacc
acatcatcgtcctcgaatacacctcatctaagcagctatgctatggtcaacatttctggg
gctgagaacggcctgggacttcctcctttacttctgccctcatcttctacagcaccgcct
cacagttcggctccattggaaggggtggtcagcgactcatcccagcaatctgctcagccc
ctgctctacacccttaaccaggctgtcaaggaggagccactggacatcggtgtgggctat
tcatatgcctccaacgtgtctctagaccaaagtgccaacctgggctacacagcctccctt
ttcttgtcgtcaaaccttggtcactcggttgtcaatggaggctctctggaacctgcagcc
acagctgctatcacctctgtcctctccagcacagaaggtcactccactttggctcacagt
gcccgtgggctccaggaagctgggggtgctctgccctcagtctacagggcacaggaagct
cagctgcccctgtccgacaatctggaaaactctgtgagtactcgagaggggcctcatgga
gtgtgtagtgacctggacatggagggaaaagaactggccaagctgcagactgttcagatg
gacgaggacagcagtgacctctga
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