Trichomycterus rosablanca: 134320105
Help
Entry
134320105 CDS
T09921
Symbol
cpsf3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
trn
Trichomycterus rosablanca
Pathway
trn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
134320105 (cpsf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
trn03021
]
134320105 (cpsf3)
03019 Messenger RNA biogenesis [BR:
trn03019
]
134320105 (cpsf3)
Transcription machinery [BR:
trn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
134320105 (cpsf3)
Messenger RNA biogenesis [BR:
trn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
134320105 (cpsf3)
U7-dependent histone pre-mRNA processing factors
134320105 (cpsf3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Gp58
Motif
Other DBs
NCBI-GeneID:
134320105
NCBI-ProteinID:
XP_062857488
LinkDB
All DBs
Position
9:35359722..35371274
Genome browser
AA seq
690 aa
AA seq
DB search
MATKRKSDVAVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
ILYTGDFSRQEDRHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTVHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKI
RKAININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMSEPEEITTMSGQKLQLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
KCVQGQRVSGILVKRNFSYHILTPSDLSNYTELSMSTVKQTQAIPFTGPLSLLHSQLRHL
AGHVEEVETAEKTTLRVFNSINLIHDANMVILEWVANPLNDMYADAVTTVILEVQSNPKA
QKIMHPKEEKMDPDMFQNRLQIMFQDMFGEECVELKDKQNLCVTVDGRTASINLEARTVD
YEETSTDDESLKEMLELAVQRLYDAMNPVM
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggctacaaagcgtaaatcagacgtagctgttccggctgaggagagcgatcagctccta
atcagacctttaggtgctggtcaagaggtgggtagatcatgcatcatcctggaattcaag
ggacgtaaaattatgctggactgtggcatccatcctggtctagaaggcatggatgctctg
ccgtacattgatttgatcgaccctgctgaaattgatctactcctaatcagccatttccat
ctggatcactgtggcgcactgccgtggtttttacagaaaaccagctttaaaggaagaact
tttatgacccatgctacgaaagctatataccgctggctactttccgattatgtcaaagtc
agtaatatatcagcagatgacatgctctatactgagacagacctggaggagagcatggac
aagatcgagactattaacttccatgaagtgaaggaggtggctggcattaagttctggtgc
taccatgctgggcatgtcttaggagctgccatgttcatgattgagatcgctggtgtaaag
attctttatacaggagatttctctcgtcaagaagacaggcacttaatggcagcagaaatt
cccagtgttaaaccagacatccttatcacagagtccacatacggtactcacatccacgag
aagagggaggaacgagaggcccgattttgtaacacagttcatgacattgtgaatcgtgaa
ggccgctgtctcatccctgtctttgctctgggtcgagcacaagagcttttgctcattctg
gatgagtactggcagaatcatcctgaacttcatgacattcctatttactatgcctcctca
ttggccaaaaaatgtatggctgtgtatcaaacctatgttaacgccatgaacgacaagatt
cgcaaagccatcaacatcaacaatccctttgtcttcaagcacatcagcaatctcaagagc
atggaccattttgatgacattggccccagtgtggtgatggcatctcctggtatgatgcag
agtggtctctctagagaactgttcgagagctggtgcactgacaagagaaatggtgtcatt
atagctggctactgtgtggaaggaacattggccaagcacatcatgtctgagccggaggag
atcaccaccatgtcaggccagaaactgcagctgaagatgtctgtggactacatttccttc
tctgctcacaccgactatcagcaaaccagcgagttcatccgagcactcaagccaccccat
gtgatcctggttcatggagagcagaatgagatggctcgcctgaaggcagctcttattaga
gagtatgaggataatgatgaggttcacattgaggtgcataatccccgaaacactgaggcg
gtcacactcaacttcagaggagagaaactggccaaggttatgggctctcttgccgataag
aagtgtgtgcagggtcaaagggtttcagggatcctggtgaaacgtaacttcagctatcac
atcctcacgccctcggatctctccaattatacagaattgtctatgagtaccgtgaagcag
actcaagccattccctttactggacccttgtccttactgcacagccagttacgtcactta
gcagggcatgtggaggaggtggagacagcggagaaaaccacactgagggtctttaacagc
atcaatttaattcatgatgccaacatggtcatattggagtgggttgcaaatcctctgaat
gatatgtatgcagatgcagtaaccacagtaattctggaggtgcagtccaatccaaaagct
cagaaaattatgcatcccaaagaagagaaaatggatcctgatatgtttcagaacagatta
cagatcatgttccaagacatgtttggtgaggaatgtgtcgaattaaaggacaaacagaat
ctgtgtgtaacagtagacggcaggactgccagcatcaatttggaagcaaggacagtagat
tatgaggaaaccagcacagatgatgagtctctaaaggagatgctggagctggcagtgcag
aggctctatgatgccatgaaccctgtgatgtaa
DBGET
integrated database retrieval system
