Trichomycterus rosablanca: 134320107
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Entry
134320107 CDS
T09921
Symbol
taf1b
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit B
KO
K15213
TATA box-binding protein-associated factor RNA polymerase I subunit B
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
trn03021
]
134320107 (taf1b)
Transcription machinery [BR:
trn03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
134320107 (taf1b)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Rrn7_cyclin_C
Zn_ribbon_RRN7
Rrn7_cyclin_N
DUF5816
ORC5_C
DUF7685
Motif
Other DBs
NCBI-GeneID:
134320107
NCBI-ProteinID:
XP_062857490
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All DBs
Position
9:35469976..35487321
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AA seq
594 aa
AA seq
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MDDELTDGYNDPCMQCGAVNWAVTDEGQFFCNNCHNVIERTKEVQSITDFVNTRQTSVTS
GKRKRDGKGGPEWMICEGFQFILKRQAEALVSLGVCSQFKTDVLWNFWKRYLQKTQQAYT
RELARKSTRHSVEQTSESEAESLAFSESSWIDDDASLKDDCSISGYSSSGGVSVGSGSVD
ADNYFSTKRKKKRHLMSMPKTLALCHLALLWIREGITLADLLRLVSNRHVPYINAHELFT
EEMRFFGRDALLFKVESFPSYNMVHTEAMQLAKLMELPMFPPVTPDCLLHPALLSLHYLI
DANLPDEMHVLVCQVIEKSGMEKDSFLTFNPTVRKPELLCYDLQAAALIIVIMKLLFKLD
DYREWKLSRKTGIKDKKRKSKKEQNQVKKKKNKKDSKMFSLKRWFMIMQPALQRARKKEE
QIEARRKWKSKKPIIQSLRMKSEILKRRRLVEQLQNRFHTLAASAPEPEPSTPSSFIFCW
GKEDGADGPSLRHQSLDCVLQKNKSTWRLVNRKYWHTALRKCRVGQCGDHFAEFKPSFPR
MYLWVLSLFSFMLGVSEGQLHKQVVFVERRLLGAKGPLRPYGGKSPRTRKKKAG
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atggatgacgagcttacagacgggtataatgatccgtgtatgcagtgtggagcagtaaac
tgggctgtaacagatgaaggacagttcttctgtaataactgtcataatgtcattgagaga
acaaaagaagtgcaaagtattactgactttgtgaacaccaggcaaacctctgttacatct
ggcaaacggaagcgagatggaaaaggtgggccagagtggatgatatgtgaaggctttcag
tttatcctcaaacgtcaggcagaagcgttagtttcattaggtgtctgctctcagtttaag
acagacgtgttatggaatttctggaagcgatacctgcagaagacccaacaggcttacaca
agagagctggcgaggaagagcacaagacattctgtggaacaaacctctgagagtgaggca
gagtctctggccttcagtgaatcgtcatggattgatgatgatgcatcgctgaaggatgat
tgttcaatttctggctattccagtagtggaggagtgtctgtgggttcgggttctgtggat
gcagacaactatttttccacaaagaggaagaagaaacgccatttaatgagcatgcccaaa
actttggcactgtgccaccttgctcttctctggattcgagagggcattactctggcagac
ttgcttaggttggtgtctaatagacacgttccttacatcaacgctcatgaacttttcact
gaagagatgaggttcttcggcagggacgccttgctcttcaaagttgagtccttcccgtcc
tacaatatggtacacacggaggcaatgcagctggccaagctgatggagctgcccatgttc
cctccagtaactccagactgcctgcttcacccagctttgctcagcctgcactacctgatt
gatgccaaccttcctgatgaaatgcatgtgttagtatgtcaagtaatagagaaatcaggc
atggaaaaagacagttttctgaccttcaaccccactgtgagaaagcctgaactgctgtgc
tatgatcttcaggctgcagcgttgattattgtgatcatgaagcttctgttcaagctggat
gattatagggagtggaagttgtctagaaaaacaggaataaaagacaaaaaacgaaagtcc
aagaaagaacaaaaccaagtcaagaagaagaagaacaagaaagacagcaagatgtttagt
ttgaaaagatggtttatgattatgcagccagcgctgcagcgagccaggaaaaaagaagag
cagattgaagcgagacgaaagtggaaatcgaaaaagcccatcatacagagtttgagaatg
aagagtgagatactgaaaaggagacgtctggttgaacagcttcagaatcgtttccacact
ctggctgcttcagctccagaacctgagccttccaccccatccagcttcattttttgctgg
ggaaaagaggacggcgctgatggacctagtctccgccaccagagcctggactgtgttttg
cagaaaaataaaagcacctggcgccttgtcaaccgcaaatattggcacaccgctttgagg
aaatgccgtgttggacaatgtggggatcattttgctgagtttaagccgagctttcccaga
atgtacttgtgggtcctgagcctcttctctttcatgctgggagtcagtgaaggccagctg
cacaaacaggtggtatttgtggagcgacggctactgggagccaaagggccactcagacct
tatggtggaaaatctccgagaacgagaaagaagaaggctggttag
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