Trichomycterus rosablanca: 134320163
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Entry
134320163 CDS
T09921
Symbol
tdrd12
Name
(RefSeq) putative ATP-dependent RNA helicase TDRD12
KO
K18409
ATP-dependent RNA helicase TDRD12 [EC:
5.6.2.5
]
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
trn03036
]
134320163 (tdrd12)
Enzymes [BR:
trn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
134320163 (tdrd12)
Chromosome and associated proteins [BR:
trn03036
]
Eukaryotic type
Gene silencing
piRNA pathway
134320163 (tdrd12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TUDOR
DEAD
CS
Helicase_C
Motif
Other DBs
NCBI-GeneID:
134320163
NCBI-ProteinID:
XP_062857583
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All DBs
Position
1:39001500..39023622
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AA seq
1311 aa
AA seq
DB search
MEIGEMLEISIIKVEHPGCLWGQTLQGPGVQQYEDLQVQMNLFYHDVNLDVEKLKPASLA
EGQVCVVFWPVLKSWCRATVESLYLGSMSHRATCFLVDHGERVIINTEDVRAPLNKFLKL
PFQVRRFKLARIHPMRLNVSVCSETAELVPSSHWDSSATKYLHNLIQASTLVEAVFCGTY
EDCTAIELYLTIKNVKICVNDDLVVKRFACFSSEKDLVEQSGCVDRSPVSLAWDIFSSPN
QILQMNGCCTVRPYQPHFLSGQSKRNNFLPRKEQLEQIPQDKSPVFGMKQCLPTGQNNAV
EKPQNETKTYEVPDKAKLTKPLKKEPENVKQTGQEDKESTLAEQLSEKLNLLSTSENPTE
LKEPAVTPEPTARDQSACARLLQLLNPHPINSDSDCLDDNVVCDPSKGGVLVHSAIAINP
CTTVSHAPITEQFRKFMLRRKYLVLGLAESYSWPSVARGCDTVLVCHNGDDPLSYMPPLL
AQLQLASVFSALTAHTGPIAVILCPGWGKVESVLNVLEESQAAPNLHPAGLLLGLGKDEA
KQAKIPNNCQLLVTTPFSFTRLLEEHCFLFLRLCHLVLDEAHELFARAPEQMSVILQHYQ
KVVCKEERTTCARQIVAVGTKWCQELEGVVRDHMVNPSIIISVTEEAALYGRVQQTVLMC
LDCNKASVLLSSLDFSPSVPQKTLLIANSAEEVENIYKTVSNTAAFSLKVHEGLTYQFDF
VIEQWKKDIGPGTQVVLVTTNDCLKALGIRDASCVVHYGFPSSPKLFGNRLFCMFKNFQN
LSNQNCAESNLPAVRSVLLLSERNACHVSGVLRYLKRTHTRLPPELLQFANGVQLAKEEQ
KTDKPLCSYLKSLGFCRDSTVCPERHTINKTLDCPLHPGSGTIMVLPLYIKSANVYFGRI
VNQKEDSYEKMAAEMNLYYAKDRRLAKEVMKGGMFAMQENDIHHRVCVTKVPDKGNQLFS
SVIAYFVDEGRTQEVKSHQLLQLPAEFQSLPSQAVEIILCRAQPIDGESDWNPKVTRAVS
LKIKGKTHLVKVMMCLGNTVWVDPMVRTTRLPGLKTFINEYNVHAEIMSTGMATTNAQHL
DLLKSLYQEHLAFAEVEPNETNCESKVVSVQKMVQAAEEVLASTMKDEISSLHNGVDLKA
ENVEPCESSNKLKDHQLITSSRGSIKASLETPGIDDKQMVGFHPHMKWFQKEATVTLTVQ
LMNPVMQKCEFFSDRVVYSAYLNYHHYCANLELHSNIIIEQCSWEMKCNQPVIKLVKKDK
AEWKTLLKYKSAFVSYDFDHIEDEDITASDGEFVENTGEEGYYMSSESDSD
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
atggagattggagaaatgttggaaatatcgataatcaaggttgagcatcctggatgtctt
tgggggcagactttgcagggacctggagtgcaacagtatgaggacctacaagttcaaatg
aatctcttctatcatgacgtcaatctagatgtggaaaaattaaagccagcttcactggct
gagggacaggtgtgtgtggtgttttggccggtcctaaagagctggtgtagagctaccgta
gaatctctttacctgggatcaatgagccatcgagccacttgctttttagtggaccatgga
gagcgtgtcatcatcaatacagaggatgtgagagcaccacttaataaattcctgaagcta
cctttccaggtacgaaggttcaagctggctaggattcaccccatgagacttaatgtgtca
gtctgcagtgagacggcagagctagttccatcttctcactgggatagttcagcaacaaag
tacctgcataatcttatacaagcatctactctggtagaggctgttttttgtggaacatat
gaagattgcactgccattgaactctacctgaccatcaaaaatgtcaagatctgcgtgaat
gacgatttagtggtgaagaggtttgcatgtttctcaagtgagaaggaccttgtggagcag
agtgggtgcgtggaccgatcacctgtcagcctggcatgggacattttctcaagtcctaac
caaatactccaaatgaatggctgctgtacagtgaggccataccagccccactttctaagt
gggcagagtaaaagaaataatttcttgccacgaaaagaacagttggaacaaatacctcaa
gataaatctccagtgtttggtatgaaacagtgcctgcccactggacaaaacaatgctgta
gagaaacctcagaatgaaacaaagacatatgaagtacccgacaaagcgaaattgacaaaa
ccccttaaaaaggaaccagaaaatgttaagcaaacaggccaagaggataaagagagcacc
cttgcagaacagttgtctgaaaagctgaacctgctcagtaccagtgaaaaccccacagag
ctaaaagagccagctgtcactccagagccaactgccagagatcaatctgcttgtgctaga
ttgctacagttgctgaatccacatcctataaattcagactctgattgtcttgatgataat
gttgtatgtgaccccagcaagggtggtgttttggtgcactcagctattgctatcaacccc
tgcaccactgttagtcatgctcccatcacagagcagttccgtaagtttatgttaaggaga
aagtacctggtgctaggtctggcagagagctacagttggccgtctgtggcacgaggatgt
gacacagtgctagtgtgccacaatggagatgatccgctgtcctacatgccacctctgctg
gctcagctgcaactggcttctgtgtttagtgcccttactgcgcatacagggcccatagca
gtgatattgtgtccaggctggggaaaggttgagtctgtgctgaatgtgctagaagagagt
caggcagctccaaatctccaccctgctggtctgctgcttggactgggcaaggatgaagcc
aaacaagcaaagatccctaacaactgtcagttgctggttaccaccccatttagtttcacc
aggctgctggaagagcactgctttctcttcctaaggctttgtcacctcgttttagatgaa
gctcatgagctttttgcaagagctcctgaacagatgtcagtcatcttacaacattaccaa
aaagtggtgtgcaaagaggagagaaccacatgtgctcggcagattgtagctgtaggaact
aaatggtgtcaagagctggagggtgtggtccgggatcacatggttaacccctctatcatc
atctcggtaacagaagaggccgcattgtatggcagggttcaacagacagttcttatgtgt
ctggattgcaataaggcatcagtgctgctcagctctcttgacttcagcccctctgttccc
cagaaaactctccttattgccaattcagctgaggaggtagagaacatctacaagactgtc
agcaacacagcagcattctctctgaaagttcatgaaggccttacctaccagtttgatttt
gtgattgagcagtggaagaaagatattggtccagggacacaggttgtcttggtgaccacc
aatgattgcctgaaggcccttggtatcagagatgcttcatgtgtggtgcattatggtttt
ccaagctcccctaaactgtttggcaaccggcttttctgcatgtttaagaacttccagaat
ctctctaaccagaattgtgccgagagcaacctacccgctgttcgatctgtgttactgctg
tcagaaagaaatgcttgtcacgtttctggtgtgttgcgctacctgaagcgtacacacact
agactgcccccagagctcctgcagtttgccaatggagtccagctggccaaagaggagcag
aagactgacaaacctctctgcagctacctgaagagtctgggcttctgcagggacagcaca
gtttgcccagaaagacataccattaataaaacccttgactgcccactgcatccaggctct
ggcactatcatggtcttgcctctttacattaagagtgcaaatgtgtactttggccgtatt
gtaaaccagaaagaggacagttatgagaaaatggcagctgagatgaatttgtactatgct
aaagatagacgtcttgcaaaggaagtgatgaagggaggcatgtttgcaatgcaagaaaat
gatattcatcacagagtgtgtgtgaccaaggtgccagataagggcaatcagctgttctcc
agtgttattgcttactttgtggatgaaggccgcacacaagaagtaaagtcacatcagctt
ctgcaacttccagcagagtttcagagcttgccgagtcaggctgtagaaataatcctgtgc
agggctcaacccattgatggagagtcggactggaacccaaaggttaccagagctgtcagt
ctgaaaattaaaggaaaaacacatctagtcaaagtgatgatgtgtctgggcaatacagtt
tgggttgatccaatggtacgcacgacacgtttaccgggactaaagacctttataaatgag
tataatgtccatgcagagataatgtccactgggatggcaaccacaaacgctcagcatctg
gatttgctgaagtcactttaccaggaacatttggcctttgctgaagttgagcctaatgag
actaactgtgagagtaaggtggtgtctgtgcaaaagatggttcaggctgctgaagaggtt
ctggccagtactatgaaagatgaaatcagtagcttgcacaatggagtggatttgaaagca
gagaatgttgaaccctgtgagtcttcaaacaagctcaaggaccaccagctcataacatct
agtagaggatcaatcaaggcctctttggaaacacccggaatagatgataaacagatggtt
ggttttcacccacacatgaagtggtttcagaaagaagcaacagtcactcttacagtacag
ctaatgaaccctgtgatgcagaagtgtgagtttttttcagacagagtggtttacagtgca
tatttgaactaccaccattactgtgccaacctagagttgcacagcaacatcatcatagag
cagtgctcatgggaaatgaagtgcaatcaaccagtaatcaagctggtaaagaaagataaa
gcagagtggaaaacactcctcaaatacaagagtgcgtttgtgagttatgactttgaccac
attgaagatgaagacattactgcttcagatggtgagtttgtggagaatacaggagaggag
ggctactacatgagctcagagagtgacagtgactga
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