Trichomycterus rosablanca: 134320286
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Entry
134320286 CDS
T09921
Symbol
lrrc4ca
Name
(RefSeq) leucine rich repeat containing 4C, genome duplicate a
KO
K07523
netrin-G1 ligand
Organism
trn
Trichomycterus rosablanca
Pathway
trn04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
134320286 (lrrc4ca)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
trn04515
]
134320286 (lrrc4ca)
Cell adhesion molecules [BR:
trn04515
]
Immunoglobulin superfamily
NGL family
134320286 (lrrc4ca)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
ig
LRR_14
LRR_9
V-set
Ig_2
LRRNT
Ig_6
DUF6821
Syndecan
Motif
Other DBs
NCBI-GeneID:
134320286
NCBI-ProteinID:
XP_062857699
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Position
1:complement(30773082..30775016)
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AA seq
644 aa
AA seq
DB search
MLNTMTFSPQQQMMTGPRWNRALSYPLFILLLALQLLVVAGLVRAQTCPSVCSCSNQFSK
VICTRRGLRDVPDGISTNTRYLNLQENLIQVIKVDSFKHLRHLEILQLSKNHIRSIEIGA
FNGLANLNTLELFDNRLTTIPNGAFEYLSKLKELWLRNNPVESIPSYAFNRVPSLRRLDL
GELKRLSYISEGAFEGLSNLRYLNLGMCNLKEVPNLTPLVRLDELEMSGNQLSVIRPGSF
KGLVHLQKLWMMHAQIQTIERNAFDDLQSLVELNLAHNNLTLLPHDLFTPLHHLERVHLH
HNPWNCDCDILWLSWWLKEMVPANTSCCARCSTPASYKGRYIGELDQNYFHCYAPVIVEP
PVDLNVTEGMAAELKCRANSLTSVSWITPDGSIMTHGAYKVRISVLNDGTLNFTNVTLQD
TGTYICMVSNSAGNTTASATLNVSSTENSSFSYFTTVTVETIEPANDEGHTVVLQKIGPT
PSSVMWETTTIPTTTTTTSRVSTKATDKTYTIPVTAMGDGSLNTLDEVMKTTKIIIGCFV
AITLMAAVMLIIFYKMRKQHHQQNHHAPTRTIEIINVDEDCMTVGPTMEGHLTLPPLEHE
HINHFNSYKTVYNHSSTINSIHTSAHEPLLIRASSKDNVQETQI
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgttgaacacgatgaccttctcaccacagcagcagatgatgacaggtcctaggtggaac
cgggccttgtcctatccattgtttatactgttgttagccttgcagctgctagttgtggct
ggcttggtgagagctcagacctgcccatctgtctgctcttgcagtaatcagttcagcaaa
gtcatctgtacacgccgaggcctgcgagatgttcctgatggtatctccacaaacacccgg
tacctaaacttgcaagagaacctaatccaggtgattaaggtagacagtttcaagcattta
cgacacctggaaatcctgcagcttagcaagaaccacatccgtagcattgaaattggagcc
tttaatggcctggctaacttaaacacactggaactctttgataacagattgactactata
ccaaatggagcatttgaatatttgtctaagctcaaggagctgtggctaaggaataatcct
gttgagagcataccatcctatgccttcaaccgtgtgccctcactaagacgactagacctt
ggggagctgaaaaggctctcttatatttctgaaggtgcttttgaaggcctgagtaacctg
cgatatctaaaccttggcatgtgtaatctaaaagaggtacccaatcttactcccctggta
cgtctggatgagttggagatgtcaggaaatcagctctcagttatacgaccaggctctttc
aaaggacttgtccacttgcagaaactgtggatgatgcatgctcagatccagacaattgaa
agaaatgcctttgatgatcttcagtcacttgtggaactgaatttggctcataataatctt
accctgcttccccatgacctctttacaccccttcaccatttggagagggtgcacttacac
cacaacccttggaattgtgactgtgacatcctgtggcttagctggtggttgaaggaaatg
gtcccagccaacaccagttgctgcgctcggtgcagtacccctgccagctacaagggacgc
tatattggcgaattggaccaaaactatttccactgttatgcaccagtcattgtggaacca
cctgttgatttgaatgtaacagaaggcatggctgcagaactaaaatgcagagctaattca
ctgacatcggtcagttggattacacccgatggatccatcatgacacatggtgcttataag
gtgcgtatttctgtgctcaatgatgggacattaaactttacaaatgtcacattgcaagat
acagggacttatatatgcatggttagcaactcagcgggcaacactacagcctctgctaca
ctaaatgtgtcctcaacagagaacagcagcttcagctacttcaccactgtaacagtagag
acgattgagccagcaaatgatgaaggacacaccgtggtgctgcagaaaattggtcctact
ccttcgtctgtgatgtgggagacaacaactataccaactacaacaaccacaacttctcgg
gtctccacaaaagctacggataaaacctacaccatcccagttacggcaatgggagatggt
tctctcaacactttggatgaggtaatgaagaccacaaagatcatcattggctgctttgtg
gccatcacactaatggctgcagttatgctgatcatcttctacaaaatgcgcaagcagcat
caccagcagaaccaccatgcaccaacacgaacaattgagattattaacgtagatgaggac
tgcatgactgttgggccaaccatggagggtcaccttactctgccacctcttgagcatgag
catattaaccatttcaatagttataaaacagtatacaatcactcgtctactataaactct
atacatacctctgcacatgaacctttgcttattcgggccagctcaaaagacaatgtacaa
gagacccagatctga
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