Trichomycterus rosablanca: 134320353
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Entry
134320353 CDS
T09921
Symbol
hmbox1b
Name
(RefSeq) homeobox-containing protein 1 isoform X1
KO
K24885
homeobox-containing protein 1
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
trn03000
]
134320353 (hmbox1b)
Transcription factors [BR:
trn03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
134320353 (hmbox1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1_N
Homeodomain
Homeobox_KN
HTH_3
HTH_31
AbiJ_NTD3
HTH_37
HTH_24
HTH_26
DUF494
CUT
HTH_23
Motif
Other DBs
NCBI-GeneID:
134320353
NCBI-ProteinID:
XP_062857776
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All DBs
Position
9:complement(4753944..4772606)
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AA seq
453 aa
AA seq
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MSQYTDEPRFTIEQIDLLQRLRRSGMTKPEIIHALDTLDRLDREHGDKFGRRGSASSSCG
PAPSVSDPAPSHGAAAEPSVSHLVVSTATTSTQTQFLSPSPSNSYATSPPVTLVTVGQNG
TANGKLSPPPRFAALGQAAAAVRPYGFDGTEEELDVDDKVEELMRRDSSMVKEEIKAFLA
NRRISQAVVAQVTGISQSRISHWLLQQGSDLSEQKKRAFYRWYQLEKTTPGATLNMRPAP
LNLDEMEWRQTPPPISTATGSFRLRRGSRFTWRKECLAVMESYFNDNQYPDEGKREEIAN
ACNAVIQKPGKKLSDFERVTSLKVYNWFANRRKEIKRRANIGSFFQEATILESHGIDVQS
PGGHSNSDDIDTSDYTEQSCDLPYFEKRGVTRPFGFYRLEPTSPTQDDSTNHADHQDPIS
LAVEMAAVNHSILALSRPGAVASDIKTEVLDDD
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagtacacagacgagccgcgcttcaccatcgagcagatcgacctgctgcagcgg
ctccggcggagcggcatgaccaagcctgagatcatccacgccctggacacgctggaccgc
ctcgaccgggagcacggcgacaagttcggtcggcgcggctcggcctcctcgtcctgcggc
cccgccccctccgtgtcggaccccgccccctcccacggcgccgccgcagaaccctccgtc
tcccacctggtggtctccaccgccaccacctccacacagacgcaattcctctcgccgtcg
cccagcaacagctacgccacctcgcctcccgtcacgctggtcaccgtgggacagaacggc
accgccaacgggaagctgtctccgccgccccgcttcgctgcgctcggccaggcggcggcg
gcggtcaggccgtacgggtttgacgggacggaggaggagctggacgtcgacgacaaggtg
gaggagctcatgaggagggacagcagtatggtaaaggaggagatcaaggcattcctggct
aaccggcgtatctctcaggcagtggtggctcaggtcacagggatcagtcagagtcgcatc
tctcactggctcctacagcagggatcggacctgagcgagcagaagaagagagctttctac
cgctggtaccagctggagaagaccacgccaggcgcgaccctgaacatgcggcccgccccc
ctcaacctggacgagatggagtggcgccagaccccgccgcccatcagcacggccaccggg
agcttccgcctgcgcaggggcagccgcttcacctggaggaaggagtgcctcgccgtgatg
gagagctacttcaatgataatcagtatcctgatgagggtaaaagagaggagatcgccaac
gcgtgcaacgccgtcatacagaaaccagggaagaaactgtctgatttcgagcgagtcaca
tcgttgaaggtctacaactggttcgctaatcgccgcaaggagatcaagaggagggccaat
atcgggtcttttttccaagaagccacaatcctggagagtcacggcatcgatgtgcagagt
cccggcggccactccaacagcgacgacatcgacaccagtgactacaccgagcagagctgt
gatttgccctactttgagaagagaggcgtgaccaggccgttcggcttctacaggcttgaa
cctacatcgccaacccaggatgacagcaccaaccacgcagaccaccaggaccccatctcc
ctcgccgtggagatggcagccgtcaatcacagcatcctggctctgtcccgcccaggagcc
gtggccagcgacatcaaaacagaggtgctggacgacgactaa
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